Pseudomonas sp. URMO17WK12:I4, H042_RS0116675
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I4 H042DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCGCCAGCTGGCACTGCTGGCTTTCCGGATCGAACACGATCACCGCCTCGCCCTTGTCGAGCGCACGGCGTACGCGGTCGACGCGGGTTTGCAGCGGTG TGTCATCACCATTGTCGGTGCCGTCGCGGGTCACGAAATCTTCGATCAGGCGGGTGAGGGTATCTGCCTCGAGCAGATTGGCGGGGATCAGCAAGGTTTT CTCCTGAGGCGTAGCGTGGCTTTTAACCATCGGATGCATGGGGTTCGTTGGACGGTGCTCACTGTTATTTGATCACGTTGGTGCGCGGCCGCTCAGCAAC ATTGCGAGCGAATCGCCATGCCCGCCAACAATGCTGTTCAGTCAAAGACTTAGGTTCATGTGCCGGAAACGACGGCAACCTATTTACGACGTCAACCACA TTTTCGAAGTTGATGGTTTTTTAGGCTGTTCAAAAGCTGACCAGCGTGCTAAAACCTTTCTCATCGAGTGACATAGCCGCTTGAAAACGAAGGGAAAAGT
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| DNA Sequence for Gene |
>H042_RS0116675
ATGACCAAGTCGGAGTTGATCGAAAGAATCGTCACCCATCAAGGGCAGCTTTCAAACAAAGATGTCGAGCTGGCCATCAAGACCATGCTGGAACAGATGT CCCAGGCGCTGGCCACCGGTGACCGCATCGAGATCCGCGGCTTTGGCAGCTTTTCTCTCCACTATCGCGCGCCGCGCGTCGGTCGTAACCCCAAGACCGG GCAGTCGGTCCGTCTGGACGGCAAGTTCGTTCCGCACTTCAAACCGGGCAAGGAATTGCGTGATCGGGTGAACGACGAGGAGGAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCTCGTGGCTGGTGGTGACATCCGCGCCAGTTGCCCTTTGACCACTCAACGGCACGCGAGTGGTAGTAGCTCGCAATCCTCAGCCTGCAACGGGCTGCG GTGAAGTTTCTGCTTTTCCCTTCAAGTAATTCTTTTGAGCCCCAAGGTCTCTTTGTCTCTACGTAAGAAATGTCGCCAGAGCATCTATTTTCTGTTGTGA GGCCAGGCGGGTGCGCGCAGTCCATGCCCGCGATTTGCCGAATGACACTCCGCTCACGAGCCTGGCCAGTAGCTTGAGTCAGCCGCTGTAGCCTGGGTTG AGCGAAGCGATACCCGGGGGATCAGGCCCAGATTTAACAAAACACTCTATGCCTTGGCTCTTTATTCAATGCGCCTCATAACGCATCATTACGTCCCTCA AAAATCCCCCGCCAGACGTTAAAGGACTAACTGATGGAATACCCGCACATCACCCATCACGGCGCCCAGGACGGTGTAACCGGCTCCTGCCACCAGTTGC
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| Amino Acid Sequence |
>integration host factor subunit beta
MTKSELIERIVTHQGQLSNKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRVGRNPKTGQSVRLDGKFVPHFKPGKELRDRVNDEEE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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