Pseudomonas sp. URMO17WK12:I4, H042_RS0110080
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I4 H042DRAFT_scaffold00007.7_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AACCTGACCAGCCTGGCCCAGGCTCTGGAAAACCTGTTGCGCAACGCTATCCGCCATTCCCCGGCGGACGGCCGCGTACGCCTGAGCGGCGTGCTGGAAG GCGATTGCTGGCACCTGTGCCTGAGTGACGAGGGCTCAGGTATCGACGAGCGCCACCTGGAAACCATCTTCGAGCCCTTCGCGCGACTCGACAGTGCGCG CCCCGGTGATGGTGGTTTCGGCCTGGGGCTGAGCATCGCGCGCAGCGCCATTGCCTTGCAGGGCGGCCGCTTGTGGGCGCAAAGCCCGCCAGGCAGTGGG CTGCAGATGCACCTGTTGCTACCTGCGGCCGAAGAGCAGGAGCAAAGTGTATAGTCTGTAAATGATGTTTACTCTCATATGATATTAAATATCATTTGCG CCGTTATCGCGGCGGGAAGGCTCTAGGTAGCGCCTTCAGGAGATCCAGTACCGCCGTTTTCGCCCACTTGGGCCTGACAATATGCGGTATGGGGACGTCG
|
|
| DNA Sequence for Gene |
>H042_RS0110080
ATGAATCCGAACTACAAACCGAGTCTGCTGGCTACGGCCGTTATGGTAGCGTTCAGTGCGCCGGCTGCAGTGACTGCGCAAACCACGGAAATCACCCTCG ATGAAGCGGCGGCCAGCGAAGGCGTGCAGGCGCAGCAGGGCAGCCAGGGTTTGGAAATCGGCGAAACGCGGATCATCGGTACCGCCGAGCAGGAGCTCAA GCAGGCCTCCGGGGTTTCCATCATTACGGCTGACGATATCCAGCGTCACCCGCCGGCCAACGACCTGTCCGAAATCATCCGCCGCATGCCGGGCGTCAAT CTCACCGGCAACAGCGCCAGCGGGCAGTTCGGCAATAGCCGGCAGATCGACTTGCGCGGCATGGGCCCGGAAAACACCCTGATTCTCATCGACGGCCGGC CCGTCGCCTCACGCAACGCCGTGCGCATGGGGCGCTCCGGTGAGCGCAACGGCCGCGGCGACAGCAACTGGGTGCCGGCCGAGGCGATAGAGCGCATCGA GGTACTGCGCGGTCCTGCCGCTGCCCGCTATGGCTCCGGTGCCGCAGGCGGGGTGGTGAACATCATCACCAAGGCGCCCGGCAAGACCGTATCGGGGTCG ATCACGGCCTACACCAATATTCCGGAGAACAATGACGAAGGCGCGACCCGGCGCTTGAGCTTCAACACCGCAGGGCCGCTGACCGACAACCTGTCATTTC GCGTCTACGGCAACCTGAACAAGACCGAAGCCGACGATGCCGCGCTCAACGATGACTACGCCGTGGGTAGCAACCCCGCGCCAGCCGGGCGCGAAGGTGT GCGTAACAAGGACATCAACACGCTGTTGCGCTGGGATGTAACCCAGGAGCAGACCCTCGAATTCGAAACCGGCTTCAGTCGCCAGGGCAACATCTACGCC GGCGAGCGCGCCCAGGATCACGCCTCCACGATCGGCAATACCAACGGCCTGTTAGGTCGAGAAACCAACACCATGTACCGCCAGACCGCGGCGATTACCC ATCGCGGCGACTGGGACATCGGTACCTCCCAGATCGGCATCTCCTACGAGAACACCCGCAATCGGCGGATGGCCGAAGCACTGGCCGGCGGCCCGGAAAC CGGTATCAGCGGGCAGGACAAATCGACGTCCGAGCTGGACAATTACCGACTGCATGGCGAGCTCAACCTGCCACTGGAGCTGGGTTTTCACCAGACGCTG ACCCTCGGTGGCGAGTACGTACGCGAAGAGTTGGACGACCCGTACTCCAACGGCCAGGCCTCGTCGTTCGGCGGCATTACCCTGCCAGGCTTCGCCGGGG GCGCGCGCAGCGGCGAGTCGGAAGCCGATAACTACGCGTTCTACATCGAAGACAACATCGAGATGACGCCCGACTGGACGCTGACCCCCGGTCTGCGTTT CGACGACAACAGCATCTTTGGCAACAACTGGAGCCCGAGCCTCAACAGCGCCTACAAACTGACCGACACCATCACCCTCAAGGGCGGTGTCGCCAAGGCC TTCAAGGCGCCCAACCTGTATCAGTCCAACCCCAACTACATCTACTTCACCAAGGGCAACGGCTGCCCGGATGGTTCGGGCGGCGGCGGTGGCTGCTACA TCCTCGGCAACCCGAATCTGGAGGCGGAAACCAGCATCAACAAGGAACTGGGCATCGCCTTTGATGACGCCGGCTGGGTCGCAGGGCTGACCTATTTCCA CAACGACTACAAGAACAAGGTCGTGGCTGGAATGGGCGATGGCTCCGATCCCATTCAGGTAGTGCCGGGCGCCGGCAATTACGCCGAGGTCTACCAGTGG GTCAATGCGCCCAAGGCAATCGTCTCGGGTTGGGAGGGCAACCTCACCATTCCGCTGCTGGGCAACCAGGGCGAGACGCTTAGCTGGAGCAACAACTTCA CCTACATGATCCAGAACAAGAACAAGAGCACCGGGGAACCGCTGTCGGTGATTCCCAAGTACACGGTCAACTCGATGCTCGACTGGAGCGTGACCCAAGC CCTGGACCTCTCGCTGATCGTCACCCACTACGGAAAACAGGAACCCCGGCGCCTGACCAGTCAGGGCAGCGCCGCCACCGGTGATGCGTTGCGGGCGAGG GACCCGTACACGCTCGTGGGCCTCAGCGCCAACTACGAGCTGAATGAAAATTGGCGTTTCGGCGCCGGTATCAACAATCTGTTCGACAAGCAGATTCGTC GCGAAAGCATTGCCGGCGGCGAGGGTGCCAACACCTACAACGAGCCGGGCCGGGCGTTCTATGTGTCGGCAACCACCTCGTTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CTAGCGGCATCCCAGCCACCGCCCGAGCAGGGCGGTGGTTTTTGCATTGAAACGGACTGACTCGATGGCTGCCGATTACATCACCGACGTTGCCTATCCA CACTTCTTCCAGCGCGAAACCACGCCGATCTGGCTGAATTTCGCCGCGCGTGCGCTAGGGCGGCCGAGCCCCGATCTGCGTCAGCCGTTCGTCTCCTGCG AGCTGGGTTGCGGCCAGGGATTCGCCACCGTGCTGCAGGCGGTCGCCAATCCCCAGGGCCATTTCGTCGGCGTGGATTTCAACGCCGAACATATCGCCCA CGCCAGGGCGCTGGCCCAGGCTGCCGGTGTGAGCAACGTGGAGTTCGTGGAAGACAGCTTCCAGGGCATGCTCGAGCAAGCTGCGGCAGCGCCGCGTTAC GACTTCATCATCCTGCATGGCATCTATTCCTGGGTGTCGACAGCCGATCAGCAGCGCCTGCGGCAGTTCGTCGAGCGCGAGCTCAAGCCCGGTGGCATCG
|
|
| Amino Acid Sequence |
>outer membrane receptor protein
MNPNYKPSLLATAVMVAFSAPAAVTAQTTEITLDEAAASEGVQAQQGSQGLEIGETRIIGTAEQELKQASGVSIITADDIQRHPPANDLSEIIRRMPGVN LTGNSASGQFGNSRQIDLRGMGPENTLILIDGRPVASRNAVRMGRSGERNGRGDSNWVPAEAIERIEVLRGPAAARYGSGAAGGVVNIITKAPGKTVSGS ITAYTNIPENNDEGATRRLSFNTAGPLTDNLSFRVYGNLNKTEADDAALNDDYAVGSNPAPAGREGVRNKDINTLLRWDVTQEQTLEFETGFSRQGNIYA GERAQDHASTIGNTNGLLGRETNTMYRQTAAITHRGDWDIGTSQIGISYENTRNRRMAEALAGGPETGISGQDKSTSELDNYRLHGELNLPLELGFHQTL TLGGEYVREELDDPYSNGQASSFGGITLPGFAGGARSGESEADNYAFYIEDNIEMTPDWTLTPGLRFDDNSIFGNNWSPSLNSAYKLTDTITLKGGVAKA FKAPNLYQSNPNYIYFTKGNGCPDGSGGGGGCYILGNPNLEAETSINKELGIAFDDAGWVAGLTYFHNDYKNKVVAGMGDGSDPIQVVPGAGNYAEVYQW VNAPKAIVSGWEGNLTIPLLGNQGETLSWSNNFTYMIQNKNKSTGEPLSVIPKYTVNSMLDWSVTQALDLSLIVTHYGKQEPRRLTSQGSAATGDALRAR DPYTLVGLSANYELNENWRFGAGINNLFDKQIRRESIAGGEGANTYNEPGRAFYVSATTSF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|