Pseudomonas sp. URMO17WK12:I4, H042_RS0108270
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I4 H042DRAFT_scaffold00006.6_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGTCTTCGGCCACGAAGATGTCGTTGAGGATCCACACGCGCTTGAGCGACAGCGACGAATAGCTCGGGTACAGCTGGCAGAAGCCCAGCAGCTTGTCGTC GCCGTCATCGGGTAGGGCCAGGTAGATCACCGATTCGTCGCGCTTGAGGCGGGTTTCCAGAAACTTGCGCGAGGAGTCGGGGAACGGCCTTTCGCCATAG AACTCGCGGTAGCGAACGAACAGCGGGGTGAGTAGATCCAAGTGCTCCAGGGTGGCTTGCACGATGCGCATGGGCGAGGGCCTCGTTTGGCTGTCGGGTG GAGACGGCAGGCGTTTCGATTAAAGTGCAGTTTTCGCCCTAAAGCCAGCGGGGCAGAGCCTTTACCGTGCGGCGGGGTGCCATCCGCGGCGCTGGTTTCG CCCTACCGGGCAGGCACGGCGAAAGGCGCCGCTGTGCTAATCTGCGGCCATGTTTTCACGCGGCTCGCCGCCTCCAGGCGCGCCTGTTCTCGAGGTTTTC
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| DNA Sequence for Gene |
>H042_RS0108270
ATGCATATCCACATTCTCGGCATCTGCGGCACCTTCATGGGCTCGCTCGCAGTGCTGGCCAAGGAGCTGGGCCATCGCGTTACCGGCTCGGACGCCAACG TCTACCCGCCGATGAGCACCCAGCTCGAAGCCCAGGGCATCGAGCTGATGCAGGGCTATGACCCGGCGCACCTGCAGCCGGCGCCCGATCTGGTGGTGGT CGGTAATGCCATGAGCCGTGGCAATCCAGCGGTGGAATACGTGCTCAATAAGGGTCTGCCCTATGTGTCCGGCCCGCAGTGGCTGGCCGACCATGTGCTG CAGGGCCGCTGGGTGATGGCGGTGGCCGGTACCCATGGCAAGACCAGCAGCTCGAGCATGCTGGCCTGGGTGCTGGAGCACGCCGGCATGGCGCCGGGCT TTCTGATCGGCGGCGTGCCGCAGAACTTCGGGATTTCCGCACGCCTGGGCGACACGCCGTTCTTCGTGGTCGAGGCCGACGAGTACGACAGCGCCTTCTT CGACAAGCGCAGCAAGTTCGTGCACTACCGCCCGCGTACCGCGATCCTCAACAACCTGGAATTCGACCACGCGGACATTTTCCCGGATCTGGCCGCTATC GAACGGCAGTTCCACCACCTGGTGCGCATCATCCCCAGCGAAGGCCTGGTCATCCATCCGGCCTGCGAAACCGCCCTGGCGCGGGTGATCCAGATGGGCT GCTGGACGCCCGTGCAGACCACCGGTGAAGGCGGCCAATGGCAGGCGCGCCTGCTCAGCGCCGATGGCTCGCGCTTCGAGGTGAGCTTCGACGGCAAGGT CGAAGGCGTGGTGGACTGGCAACTGACCGGCCAGCACAACGTCGCCAACGCCCTGGCCGTGCTGGCGGCAGCGCGCCATGTCGGCGTGGTGCCGGCACTG GGCATCGAGGCGCTGGGCAAATTCATCAACGCCAAACGGCGCATGGAGAAGGTCGCCGAGGTGAAGGGCGTGACCGTCTATGACGACTTCGCCCACCACC CGACCGCCATCGCCACCACCCTCGACGGCCTGCGCAAGCGGGTCGGCGACGAACAGATCATCGCGATCATCGAGCCGCGCTCCAACTCCATGAAGCTCGG CGCCCACCGCGACGGTCTGGCCGAATCGGCGGTGCAGGCCGATGCGGTGTTCTGGTACGCGCCGCCGAACCTGGGCTGGGACCTGGCGGCCACGGTTGCC GGCGCCACCAATCCCACCCAGGTGTGCGATTCCCTGGAGGCCATCATCGAGGGCGTGAAGGCGCGGGTACGCCCCGGCACCCAGGTGGTGATCATGAGCA ACGGTGGTTTTGGCGGCTTGCATGGCAAGCTGGCCAAGGCGCTTTCATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAAGCCTAAATTCGCGCTCAAAGCGTCGCGAGCGCAGATTAGGCAAGGCAAAAGCCTGCGAGGAAGCGGAATTTACTTTAGTAAATGAGCATTCCGAGTA GGCTTTTAACGCAGCATAAGCAAGCACAGCAGCTTTGAGAGTGAATTTATGAGCGGACCGGAGCGCATCAACCTTGCCATGACCGGCGCCTCGGGCGCCC AGTACGGCCTGCGCCTGCTCGATTGCCTGGTGCGCGAGGATCGGGAAGTGCACTTCCTGATCTCCAAGGCCGCGCAACTGGTGATGGCCACCGAGACGGA CGTCAGCCTGCCGGCCAAGCCCCAGGCCATGCAGGCCTTTCTCACCGAATACACCGGCGCCACCGACGGGCAGATTCGCGTCTACGGCAAGGAAGACTGG ATGGCGCCGGTGGCCTCCGGTTCCGGCGCGCCGTCGGCCATGGTGGTGGTGCCGTGCAGCACCGGCACCCTGTCGGCCATCGCCACCGGCGCCTGCAACA
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| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSLAVLAKELGHRVTGSDANVYPPMSTQLEAQGIELMQGYDPAHLQPAPDLVVVGNAMSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVMAVAGTHGKTSSSSMLAWVLEHAGMAPGFLIGGVPQNFGISARLGDTPFFVVEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLAAI ERQFHHLVRIIPSEGLVIHPACETALARVIQMGCWTPVQTTGEGGQWQARLLSADGSRFEVSFDGKVEGVVDWQLTGQHNVANALAVLAAARHVGVVPAL GIEALGKFINAKRRMEKVAEVKGVTVYDDFAHHPTAIATTLDGLRKRVGDEQIIAIIEPRSNSMKLGAHRDGLAESAVQADAVFWYAPPNLGWDLAATVA GATNPTQVCDSLEAIIEGVKARVRPGTQVVIMSNGGFGGLHGKLAKALS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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