Pseudomonas sp. URMO17WK12:I4, H042_RS0106115 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I4 H042DRAFT_scaffold00005.5_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATGATGGTGGTCAGCAACTGGCTGATGATGATCAGCGCCAGGCTGTCGCTGAACATGCTGAAGATGCCCAGCACTGCACCCACCACGAACGAGGCGACC AGAATCGCCACGTAGAAGATCAGGAAGCCGCCGATGATGATGCCTTTGGTGCCCTTGGTCAGCTGCCAGGCTTCGCTGAGCAGGCTGCCAATGGTGAAGT CGTAACCCCGGCTCAGGGCTTGTTCGACGCTCAGTGCCTGGCCGCCGGTGGGCGCGTCCTGCAACTGGCTGGTGGGAACGGCATAGGGGTTGGTCGTGGT GTCACTCATGATTCATCCTTGGCGAGCGGCAATGAGATTGTTTCCTGATGTTAATGGCGGATTAAATCGCTAACAAGGGGGCACTCGCCGGCTCGTTGCC AAGGTCGTGAAGGCCATCAAGTTTTTGCCAGGCCGTCGTGGTTTGTGATCGAGCGGCAACAAACCTAGACTGCGACGCTCATTCGTCACAGGAGTCCGCC
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| DNA Sequence for Gene |
>H042_RS0106115
|sbcB
GTGCCTTCCAGCCTGTTCTGGTACGACTACGAAACCACCGGCATCGACCCGCGCCGCGACCGGCCGCTGCAGGTCGCCGGTATCCGCACGGACGAGCAGC TCAACGAGATCGACACGCCGATCAACCTTTACTGCCAGCCCGGCGACGACATCCTGCCCCACCCGGCGGCCTGCATGATTACCGGCATCGGCCCGGACCG GCTGGCGCGTGAAGGGCTGAGTGAAGCCGAATTCATGACCCGCGTGCATGCCGAGCTGGCGCGCCCCGGCACCTGTGGCGTGGGCTACAACAGCCTGCGC TTCGACGACGAGGTGACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTATGCCCGCGAATGGCAGGGCGGCAACAGCCGCTGGGACCTGATCGACA TGGTGCGCACCGCCTATGCGCTACGCCCGGAAGGCATCGAGTGGCCGCAGGACGAACACGGTGTGAGCCTCAAGCTCGAGCGCCTTACCGCGGCCAACGG CATCGATCACGGCCAGGCGCACGATGCGCTATCCGACGTGCGCGCGACCATCGCCCTGGCGCGGTTGATCCGCGAGCGCCAGCCCAAACTCTATGACTAC CTCTACGGCCTGCGCAGCAAGCAGCAGGTGCTCGATCAGATCCGCCTGTTGCAGCCGCTGGTGCATGTGTCAGGGCGCTTTTCCGGGGCGCGACATTATC TGGCAGTCGTGCTGCCGCTGGCCTGGCATCCGCGCAACCGCAATGCGCTGATCGTCTGCGACCTGCACCTCGATGCGGCGCCGCTGCTTGATGAGGATGC CGATACCTTGCGCCAGCGCCTTTATACGCGGCGCGATGAACTGGGCGGCGAACTGCCGGTACCGCTCAAGCTCATTCATATCAATCGTTGCCCGGTGGTC GCGCCCTTAGGCGTATTGCGCGACGAAGATTGCCAGCGCCTGCAGTTGGACAAGACCGAGTTGCAAGCTCGCGCCAAGCGATTGGCAGATACCCAGGAAC AATGGCGAGACAAATTGCCGCAGGTGTATACGGAAGAAAGTTTCGCGTCGGTAATGGATCCCGAGCAGCAGTTGTACGATGGATTTATTGGTGACCGCGA CCGCCGACTGTGCGAGCAGGTGCGTAATTGCGATCCGTCACAATTGGCTGCACAGTCCTGGCCATTCGATGATGCACGGTTGCCCGAATTACTGTTTCGC TATAGGGCTCGCAACTTTGCGCCGATCCTGAGTAGTGAAGAGCAACAGCGCTGGCATGCGTTCTGCCGGCAGCGTCTCACTCTGCCCGAATTGGGTGCGC CCAATACGCTGGTGAGTTTCGAGACGGAGATGGCGCGTTATCTGACTGAGGCAAACGAAAGTCAGCAGGCAACATTGCACGCCTGGCTTGCGCACGCCCA ACAATTGCGCGAGCGATATGGTCTACAAAACGAAGGGAAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACTGGGTGCCGAGTGTTAAATCATCAGGTGGTCAATCGAATCTTTCTATCGGGTTGATTGAATAGACGCCCATAAAAAACGCCAGCAATGCTGGCGTTC TTCATGGACTTACCGCCCCGGTCTGGCATCAGCCCAGCAGGGTGGCCCAGCCTTCGACGACGTCGGCGCCCCACTTGGCTTTCCACTCTTTCAGGGTCTT GTGGTTGCCACCTTTGGTTTCGATGACTTCACCGGTGTTCGGGTTCTTGTACTGCTTAACTTTGCGAGCACGCTTGCTGCCGGTAGCAGCTGCTTTACCT GCTGCGCGCGGCGATTTGCCAACTTTGGCTTCTGGATCGAGCAGCGCAATGATGTCACGCAGCGATTTCTGATATTCGCCCATCAGGGTGCGCAGCTTGC CTTCGAACTCCAGTTCCTTTTTCAGCTTGTCGTCTTGCGACAGGCTTTTCAGACGCTCTTGCAGTTCTTTGATGTTTTCTTCGAGGCTGCGGTATTCAGT
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| Amino Acid Sequence |
>exonuclease I
MPSSLFWYDYETTGIDPRRDRPLQVAGIRTDEQLNEIDTPINLYCQPGDDILPHPAACMITGIGPDRLAREGLSEAEFMTRVHAELARPGTCGVGYNSLR FDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIEWPQDEHGVSLKLERLTAANGIDHGQAHDALSDVRATIALARLIRERQPKLYDY LYGLRSKQQVLDQIRLLQPLVHVSGRFSGARHYLAVVLPLAWHPRNRNALIVCDLHLDAAPLLDEDADTLRQRLYTRRDELGGELPVPLKLIHINRCPVV APLGVLRDEDCQRLQLDKTELQARAKRLADTQEQWRDKLPQVYTEESFASVMDPEQQLYDGFIGDRDRRLCEQVRNCDPSQLAAQSWPFDDARLPELLFR YRARNFAPILSSEEQQRWHAFCRQRLTLPELGAPNTLVSFETEMARYLTEANESQQATLHAWLAHAQQLRERYGLQNEGK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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