Pseudomonas sp. URMO17WK12:I4, H042_RS0105205
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I4 H042DRAFT_scaffold00003.3_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATGACCGACTGGCCCATCTGCCTTTCCGGCTGGCCCTGGGCGAGGCGCTCGAGCTCGAGAAAGTCGGCGTCGTATTCGAGGTCTTCGCCGTGCGGCGTC TCGTCGGATACCGGGTTGAGCAGGTGCGACACATCCACCACGTCAGGTGTTCTCCATGTCAGGCCCAGGGGTCGAATGAGCGCTCGCCGCGTGACAGCCA GGCGGCCCTTGCTCATGACGAAAAGCGGCTAAATGCCACTATTCAGGCGGGGTTCGGTGCAGATCGGCGCCATTCTCCGAGCGCTCTTTGAGCATTGTCA AGCGAGGGCAAGGCGGTGGAAACTGTCGCGATGCACAGTATTTCGGTCTTCTGTGCGGTGACTCACAACCGCCTCGAATTTATTCCCGTCCGACCATTGA ACCGTCTTGATTAAGGGAAAAAAATAGAGCGCTTTGGCTATTGACGATGGTCCTCGTCAGTGGCGTTTCTGTTTTTCCGGCCGCACTGCAAGGAGTCGCA
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| DNA Sequence for Gene |
>H042_RS0105205
ATGCCGTTGCGCTTGTTCATCACCACGTACCACAAGCTGACCCCCGGGCAACGGGCGGAGGTCGAGCTCGATCGCGGTGAGCTGAAGATCGGGCGCAGTG CCGGCAACGACTGGGTGCTGCCCGACCCCGAGCGTCTGGTGTCCAGCCAGCACTGCGTCATCCAGTACCGTGACGGCACCTACTACATCACCGATACCAG CACCAACGGGGTGATCCTGCAGAACGCCGGCACGCGCCTGCGCCGCGGCAGCAGCGAGCCGCTGCAAGACGGCGAGGTGCTGAAGATAGGCGAATACGAG ATCCGCGTGCAGATCAGCGGCATCAGCGTCGCCCCTACCGCACCGCCGGCATCCGGTATGGCCGACGACCCGTTCAACAGTTTCGAGGCGCTGCTCAGCC GCAGTGCCCAGCCGCTGGAAATGCCGCCGGTCAATCCCGCGCCGACCGCCCCGGCGCCGCGCCGCGATTCGCCATTCGACACCAAGCCGGATCTGTTCGA TTTTCTCAGCCCGCCGCCGGCCGTGGCGCCGTCGGTGTCCGATCACGTGCCGGCCCAGCAGCATGACTTCCGCCCGCCGCGCCCGACGCAGCCGGCGCCT GCGGTGGTGTCTGCCGAGTTGCCTGAAGCAGCGCCGGCCTCGGTGATCCCGGCAGACTGGGACCCGTTCGCCGACTTGCAGGCCTTGGCGAAGCCTCAGC CGATTCCCGATCCCTTTGCCGCGCCGCCCGGGGTGGACGCGCTGCAGATTCCGGACCCTTTCGCCGAACCGCCAAAAGCCGAAGCGCCGCCGATCCCGGA TCCGTTCGCCGACCTGGCGCCGCTGCCGGCGGTGGAAATCCCCGCGTTCACCGTGGAGCAACCGCCGGTTCAGCCGGTTCAACCTAAGCCTGTTGCCGCG CCGGTGGCGAAACCCCAGCCTGCACCTGCTCCTGCAGCGCCAGCTGGCTTTGACGATGGGGAGCTGATGGAAGCCTTCCTGCGCGGCGCCGGTCTGCAGC ACCTGCGCCTGGACCGCGCGGCGGCCGCGGCGCAGATGGAGGCCATCGGCCGCAGCTACCGGTTGATGGTCGAGGGGTTGATCGACGTGTTGCGCGCCCG GGCCAGCCTCAAGGGCGAGTTCCGCATGGCGCAGACCATGATCCAGCCGGTGCAGAACAACCCGCTGAAATTCGCGCCCAACGTCGACGAAGCGCTGCTC ATGTTGCTGCGTCACGACAACCAGGCGTTCATGGCGCCGGACCAGGCGGTGGGCGAGAGTTTCGACGACCTGCGCGCCCACCAGCTGGCGCTGATGGCGG GCGTGCAGGCAGCCATCAAATATTTGCTCGCGCGCTTTGAACCGCGTGAGCTGGAAGGGCGTCTGAACAAGCCGAGCGGGCTCTCGGCGCTGCTGCCCAA TGGCCGTCGGGCGCATTACTGGGAGCTGTTCACCGAGCTGTACGCGACCATCTCCCAGGAGGCCGAGGACGGTTTCCAGGAGTTGTTCGGCCGTGAATTC AGCCGCGCCTACGAAGAACACATTGCGAGATTGAGAGGCCGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCCCTGTGGCCCGCCGCGTCGTGGCGGGCCTGCGGTAACCATCGAGGAAGCGTTATGCCAAGGATTCTGACACTGCTGGTCTTTCTGCTGGTCGGCGCC TGCGCGTCGGGGCCGAAGGAGCCGGTGCCCACCACCGTCGAGTTGCAGCTACAGGCCAGCCGCGACCTCAACCCGGCGCTCGACAGCGCGGCTTCTCCGG TCTGGGTGCAGATCTACCAGCTGCGCAATGCCTCGACCTTTTCCCGTGCTGACTTCTTTTCGCTGGTCGATCGTGCCGACGCCACCCTGGCGAGCGAGCT GATCGAAACCGAGCGTTTCGTGGTGCGCCCCGGCGAAACCCAGCGCAAGTCATTGACCCTCGACGACGCCACCCGCCACCTCGGCGTGGTGGTGGCCTAC CGTGCCCTCGACCGTTCGATCTGGCGCCAGGTCATCGAAATTCCTGCCCATCAGGCCAGCGCGCTGCGCCTGCAGCTGGACGCCTATGCCATCAGCGCCG
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| Amino Acid Sequence |
>signal peptide protein
MPLRLFITTYHKLTPGQRAEVELDRGELKIGRSAGNDWVLPDPERLVSSQHCVIQYRDGTYYITDTSTNGVILQNAGTRLRRGSSEPLQDGEVLKIGEYE IRVQISGISVAPTAPPASGMADDPFNSFEALLSRSAQPLEMPPVNPAPTAPAPRRDSPFDTKPDLFDFLSPPPAVAPSVSDHVPAQQHDFRPPRPTQPAP AVVSAELPEAAPASVIPADWDPFADLQALAKPQPIPDPFAAPPGVDALQIPDPFAEPPKAEAPPIPDPFADLAPLPAVEIPAFTVEQPPVQPVQPKPVAA PVAKPQPAPAPAAPAGFDDGELMEAFLRGAGLQHLRLDRAAAAAQMEAIGRSYRLMVEGLIDVLRARASLKGEFRMAQTMIQPVQNNPLKFAPNVDEALL MLLRHDNQAFMAPDQAVGESFDDLRAHQLALMAGVQAAIKYLLARFEPRELEGRLNKPSGLSALLPNGRRAHYWELFTELYATISQEAEDGFQELFGREF SRAYEEHIARLRGR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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