Pseudomonas sp. URMO17WK12:I4, H042_RS0102085
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I4 H042DRAFT_scaffold00002.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCAGCTAGGCGACTTAACCTGACCCCGTCATCTACAGATAGAGGGTCATCCCCATGAAAGCTCCCGTTATCGCTCTGCTGCTCGCTCCGCTGTTCTCCAC TGCCGCTCTGGCTGCCGGCTACACCGGCCCGGGCCAGGTCGCCCAGGTCACTACCGTTGAACAGGCTCTGAAAGCCGGCGACGATACGCCAGTGGTACTG CAAGGCCAGATCACAAAGCGCCTGCAGGACGAACTCTATGAGTTCAAGGACGCCACCGGCACCATCCACGTCGAGATCGACGACGAAGACTGGCCGCCGC AAGCCATCTCCGAGAAAGCCACCGTCAAGCTGACCGGCGAGGTCGACAAAGACCTGACCAGCCGTGAAATCGACGTCGATATCGTCGAGCTGGTGAAATA ACCGCCACGCTGTTAGCTTCCCGTCACTGCACTGAATGGCCGCCTCTCGACACACCGAGGGGCGGCGTTGTCATTTCTGTCGTTGCATATGTGAGTTGCC
|
|
| DNA Sequence for Gene |
>H042_RS0102085
ATGGGCCCTGTGTTTTCAATCAAGCGTATTGTTCTGTTGCTGGTTGTTCTGTCTCTGGCGGCTATCGCTGTCGTGGGTTACGAATTCCGACTCTTTGAGC GGCTGTGGTTCAACGTCAACCAGCCCACCCAGGCGCCGGATCACTCGCTGTGGCTGAACGACTACGAGGTGGTGATCGAAGGCAAGCGCCTCGAAGGTGT GAAAGAGGATGTGTCCGCGCTTACCTATGATCCGGATCGCAAGAGCCTGTTTACCGTTACCAACCAGAACTCCCGTTTGATCGAGCTCTCGCTGGAGGGC GAGGTGCTCCGGCAGATCGAGCTGGTGGGTTTTGGCGATGCCGAGGCGGTGGAGTATGTCGCCCCCGGCCACCTGGTTATCGCCGATGAGAGGCCGCAGC GTCTGGTGGATGTGCGCATCGATGACGCCACCACCTCGGTGAACGCCGCCGATGGCCAGCAGCTGTCGGTGACACTGGATATGGGGCGCGCCAACAAGGG CTTCGAGGGCCTGGCCTACGATCTGGTGGGCAAGCGTCTTTTCGTCGCCAAGGAGCGCGATCCGCTGCGGATATACGAAGTGAAGGGTTTTCCGAACTTA GATCCTTCGGTACCCAGTTCGGTGCAGATCAGCGAAAACCTCAAGCGTGACGCCGCCATCTTCGTACGTGATCTCTCCAGCCTGCATTACGACAGCCGTA CGGGGCATCTACTGGCCCTGTCGGATGAGTCGCGGCTGGTCGTCGAGCTGGACCAGGATGGCAAACCGATCAGTAGCCTGTCGCTGCTGCCCGGACAGCA CGGCCTGAAGAAATCGGTTCCCCAGGCCGAAGGCATCACCATGGATGATCAGCGCGTGCTCTACCTGACCAGCGAGCCGAACCTTTTCTATGTGTTCAAA AAGAAGACCGAGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TCGCTCACTCGGCCTTCCATTGTCCCGCCTGAGCGCTTGGAGCCCATTCACGATCTGCTGCGCGTCGGCGCTACTGCGTTAAAAACAAAGCTGGATTGCC GGACCAGCCCGCTTCCTCGCTTATTTTTGCCTTGTATCGCTCTAGCTCGCTATGCGTGCTCACCCGCTCCTTCGGAAATTCGGTTTGACGCGCCACCGCC ACAAATCTTCTTATGATGCTAGCAACGACACCGATTTCACCTGCGCCCACAGCGCCTGACCGGCGTGGACACCCAGCTGGTCGAAAGAATAGCGGGTGAT GCGCGCGATGATGCGCTGCTCGCCCAGCTGTAACTCGACCAACCGGTGCGCCTGATTAGGCAGGTCGAACCAGCCTTGCACCGTCACCGCCAGCAGGTTG AGCACGCTGCTGTCGCGAGCCTGTTCAAGGCTCAGGCTGACGTCGCGGGGCTTGATCTTGATGCGCACCGAACGCCCAGCCGGCAGCGGCGCGTGCGCCA
|
|
| Amino Acid Sequence |
>DNA-binding protein
MGPVFSIKRIVLLLVVLSLAAIAVVGYEFRLFERLWFNVNQPTQAPDHSLWLNDYEVVIEGKRLEGVKEDVSALTYDPDRKSLFTVTNQNSRLIELSLEG EVLRQIELVGFGDAEAVEYVAPGHLVIADERPQRLVDVRIDDATTSVNAADGQQLSVTLDMGRANKGFEGLAYDLVGKRLFVAKERDPLRIYEVKGFPNL DPSVPSSVQISENLKRDAAIFVRDLSSLHYDSRTGHLLALSDESRLVVELDQDGKPISSLSLLPGQHGLKKSVPQAEGITMDDQRVLYLTSEPNLFYVFK KKTE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|