Pseudomonas sp. URMO17WK12:I4, H042_RS0101795
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I4 H042DRAFT_scaffold00002.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCAGCGCCGACGACGTGCAGACCATCCGCCAGGGCGGCCCGGCCTCCAACCTTCTGCTGGTCGCCCGCCTCGGTATGCTGGCCGGCGTGCTGGTCGCCCT CGGGCTGATCATCTGGCTGCTGGCACGCAAGCGTCGCGCCACCCGGCAGCGCGCCGTCTGACCACAGCAGCGGGCCAACCCCTGGCCCGCTGCTGCTTGA GCCTGGGTAGCGCAACGTTGCCCGGCGCAGATCGCCCTTAGAGCCTGTTCAAAGGCTCGCGAGCTAGAGCAATGCAAGGCGAAACAGGCGAGGACGCGGA GTTTACGAGCTGTAAATGAGCAGTCTGAGCCTGTTTTCAACGCCGCAGTGCCGACGCGCAGCAGACTTTGAACAGGTTCTTAAAACGGTTGTATGAACCG TTCGTCGCTTGCCACGGTCGCATCTGCACACACCTTCGCGTCCTGCTGTGCCGGAGCCTCCATGCCGCCCGTACCGACCTCTGCGTTGCCTCGCCTTGCC
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| DNA Sequence for Gene |
>H042_RS0101795
GTGGCCCTGCTGGCTTTCGCGCTGCTGTCCGGCTGCGGCGACGAGCCGTCCCCCGCGCCGAAGAATCCGCGGGTCAAGGTGGCGACCGTCAGCCAGATGG ACTACGCGGCGGATGCCACCATCACCGGCGACGTGCAGGCACGGGTGCAGACCGACCTGTCGTTTCGCGTCGGCGGCAAGATCACCGAGCGCCTGGTGGA TGTCGGCGACACGGTGAAGGCCGACCAGGTGCTGGCGCGCCTCGACCCGCAGGACCAGCGCAACGCCGTGCGCTCCGCCGAAGCGGCCGCCGAAGCCGCC CGTGCCCAGGTCAAGCTCAGCGCCGCCAACCTGTGGCGCCAGCAGCAATTGCTGCCCAAGGGCTACACCAGCCGCAGTGAATACGACAGCGCCGTAGCCA GCGACCGCAGCGCCCGCAACAGCCTGGCCGCCGCCGAAGCGCAACTGGCCGACGCCCGCGAACAGGCCGGCTATACCGAGCTGCGCGCCGAGAGCGACGG GGTGATCACCGCCCGCCAGGCCGAAGTCGGCCAGGTGGTACAGGCGGCCACGCCGATCTTCGGCCTGGCCCGCGAAGGCGCCCGCGATGCGGTGTTCAAC GTTTTCGAAGCGCTGCTGGTCGAGCCCGGCCAGGCGGTGCAGGTCAGCCTGCTCGACAATCCCAAGGTGACTGCCCGCGGCGTGGTGCGCGAGGTCAACC CGCAGGTGTCGGCGCAGAGCGGCACGGTGCAGGTCAAGGTCGGCCTGGAAGAAGTGCCGGCGGCGATGACCCTGGGCTCGGCGGTCAGCGCCCATGTCAG CAACCCGGTGGTGCGCAGCGTCGAATTGCCCTGGTCGGCGCTGACCAAGGCGGAGAGCGAGCCCGCGGTGTGGCGTCTGGGTGAGGACGACATCGTGCAG CTGCACCCGGTGCAGGTCGGCCGCTACCTGACCGACAAGGTGATCATCCGCGCCGGCCTGAACGACGGCGACCGCGTGGTGGTGGCCGGCGGGCAACTGC TGCATCCGGGCCAGAAGGTGGAAATCGCCGCCCATGAACGGAATCAGCAGCACCAGCAGGAGCAGCAGCCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCGCGCCATCCCTTTCGCGCTGCTCGCAGCCCTGCTCGCCGGCTGCGCGGAAGAAGAAAAACCCGCGCCTATTCGTCCGGTGCTTTACACCGAGGTGCA GCAGCAGGATCAGCAGGTGCTGGGCCGCTTCGCCGGCACCATCGAGGCGCGGGTGCAGAGCACCCTGGGCTTTCGCGTCGGCGGCCGGGTGTCCCATCGC CTGGTGGACGCCGGAGCCGAAGTGACGGCCGGCACGCCGCTGGCCACCCTCGACCCCACCGACCAGCAGAACGCCCTGCGCGCCAGCGAAGGCGACCAGG CGCGCGCCGAAGCGCAGTGGATCAACGCCCAGGCCAATGCGCGCCGCCAGCAGGAACTGTTCGACCGCGGCGTCGGCGCCAAGGCCAACCTGGAGCAGGC GCAGACCGAGCTGAGCAACGCCCGCAGCAACCGTGATCAGGCCGAGGCCGCCACCCGCCAGGCCCGCGACCGTCTGAACTACGGCACCCTGAAAAGCGAC
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| Amino Acid Sequence |
>RND transporter
MALLAFALLSGCGDEPSPAPKNPRVKVATVSQMDYAADATITGDVQARVQTDLSFRVGGKITERLVDVGDTVKADQVLARLDPQDQRNAVRSAEAAAEAA RAQVKLSAANLWRQQQLLPKGYTSRSEYDSAVASDRSARNSLAAAEAQLADAREQAGYTELRAESDGVITARQAEVGQVVQAATPIFGLAREGARDAVFN VFEALLVEPGQAVQVSLLDNPKVTARGVVREVNPQVSAQSGTVQVKVGLEEVPAAMTLGSAVSAHVSNPVVRSVELPWSALTKAESEPAVWRLGEDDIVQ LHPVQVGRYLTDKVIIRAGLNDGDRVVVAGGQLLHPGQKVEIAAHERNQQHQQEQQP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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