Pseudomonas sp. URMO17WK12:I4, H042_RS0101550
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I4 H042DRAFT_scaffold00002.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGTGCGCCGTCGACGAGCAGGGCGCACCCCTGTTCGATCTGGACGCCGGGCAGAGCGTGCCGCTGCTGGCCTACAGCGCCGGCACCTACCTGGGCCGTTC GGTGAACCTGCTGCTGCGCCAGCGCGCCCTGCGCTCGACCACCGTGCACGAAACGGCCATGGCCGACAGCCTCAAGGCCATGGCCCTGCAAGGCCTGGGC GTGGCCTGGGTGCCGCGCCTGTCGATGAACGCCGAGCTGGCACGTGGCGAGCTGGTGGTGTGCGGCAAGGAGCACTGGCACATCCCGCTGGAGATCCGCC TGTACCGCTGGAGCATGTCGCGCAAGGCGGCGGTACGGCTGTTGTGGCGCAAGCTGGAAGGGGGCGTGGGGCAACTGGAGGCCATCGAGCAGCAAGCCGG AAAAATGTAATGGCGAGGCACAGCGACTTGTCGACCGCAGGTTTTTGACGATAATGCGACTTCTTATCATCTGTGGCCGTCTGTTCGACAAGGATTCGCC
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| DNA Sequence for Gene |
>H042_RS0101550
ATGCCATCCGGACTCGCCCTCGATAGGCTGTATATCGAACACCACGGCTGGCTGCAGGGCTGGCTGCAGGCGCGCCTCAACAACCGCGCCGATGCTGCCG ACCTGGCCCAGGACACCTTCCTGCGTCTGCTGCAGCGCCGCATCGGCGAGCTGGCTGAGCCGCGCGCCTACCTGCGCACGGTGGCACGCGGGCTGGTCAT CGACCTGTGGCGCCGTCGTGATATCGAGCGCGCCTGGCTGGAAACCATCGCTCAGTTGCCGGAGCACCAGGCCCCCTCTCCGGAAACCGGCCTGCTGATC ATCGAATCGCTGGTCGCCATCGACAGTCTGCTGGACGAGCTGCCGGCTGCAGTGCGCGAAGCCTTTCTGCTGGCCCAGCTGGACGGCATGACCTGCCCGG CAATCGCCCAGCGCCTGGGCGTGTCGCTGTCCACCGTCGAGCGTTACATCGCCAAGGCACTGCGCCATTGCTACCGGCTGACGTTCGAGCAGCCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGACTGACACCCCGCTGACCGCGCTGCCGGGCGAGGCGGTCGACCAGGCCATCGACTGGTCGATCAAGCTCAATTACAACAACGCGGATGCCGCGACCCA GGCGGCCTTTGCCGACTGGCTGCAAGGGCGCGAGGAGAATCGTCTGGCCTGGGAGCGCGTCCAGAGCCTGGGCGGCCGGTTCGCCAGCATGCCGAGCGAG CTGGCCCTGCAAACCCTGGGCAAACTGCCTGAGGCGCGTCTGCGCCGGCGGCAGATGACTCGGCTGCTGGTGCTGTTCGCCGGCATCGGCGCGACCACGC TGGGCGTGCGGGAAGTGACGCCCTGGCAACGCCTGGTGGCCGACTACAGCACCCGAGTGGGCGAGCGTAATCGCTGGAGCCTTGCCGATGGCAGCCTGCT GGATCTGAATACCGACAGTGCGGTGCGCCTGCACTTCGACGAGCGCCAGCGCGAACTCGAGCTGTTGCGTGGCGAGCTGCATCTGATCAGCGGTGCCGAC
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| Amino Acid Sequence |
>RNA polymerase sigma factor
MPSGLALDRLYIEHHGWLQGWLQARLNNRADAADLAQDTFLRLLQRRIGELAEPRAYLRTVARGLVIDLWRRRDIERAWLETIAQLPEHQAPSPETGLLI IESLVAIDSLLDELPAAVREAFLLAQLDGMTCPAIAQRLGVSLSTVERYIAKALRHCYRLTFEQP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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