Pseudomonas sp. URMO17WK12:I4, H042_RS0101155
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I4 H042DRAFT_scaffold00002.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACACCGGGCCGATGCTGCTCAAGGTGCGCACCCCGATCACCGCCGACGATACCGGCGGCAGCCTGCACGACCGCCTGGCCGAGCTCGGCCCGCCGGCGG TGATCGAGGCCATCGCTGGTCTCGCCAGCGGCACCCTGATGGGCGAAGTGCAGGACGACGCCCAGGCCAACTACGCCCACAAACTCAACAAGGATGAGGC GCGTATCGACTGGAGCCGCCCGGCCGATGAGCTGGAACGATTGATCCGCGCCTTCAATCCCTGGCCGATCTGCCACAGTACGCTCAACGAGGCGCCGCTC AAGGTGCTGGCCGGGCGTATCGGCGAAGGCCAGGGCCAGCCCGGGGAAATTCTCGCCGCCAGCAAGGACGGCCTGACCGTCGCCTGCGGCAGCGGCGCCC TGCAGCTCACCCGCCTGCAATTGCCCGGCGGCAAGGCGCTGAACTTCAGTGATCTGTACAACAGCCGCCGCGAGCAGTTCGCCGTCGGCACGGTGCTGGC
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| DNA Sequence for Gene |
>H042_RS0101155
ATGAACCCCAGGCTGGCCGCGGCCCGCGCCCTGGCCGCGGTACTCGAAGGCAAGGCGTCGCTGGGCACCAGCCTGCCGCCGCTGCTCGACAAGGTCGAGG CCCGCGACCGCGGCCTCGCCCAGGATCTCGCCTTCGGCGCCGCACGCTGGCAGCCACGCCTCGAACTGATCGCCGGCAAGCTGCTGCGCAAACCCTTCAA GGAAGGCGACCGCGACCTCGAAGCCCTGCTGCTGGTCGGCCTCTACCAGCTGTTCTACACGCGCATCCCCGCCCACGCCGCCATCGGCGAGACGGTCGGC TGCGTCGACAAGCTGAAGAAGACCTCGGCCAAGGGCCTGCTCAACGCCGTGCTGCGCAACGCCCAGCGCGAGGGCGACAACCTGATCCAGGAGCTGGATC GCGACCCGGTACTGCACACCGCCCATCCGCGTTGGCTGCAGAAGCAGCTCAAGGCCTTCTGGCCCGAGCATTGGCAGGCGATCTGCGCCGCCAACAACGC CCATCCGCCGTTGATTCTGCGGGTCAACCGCCGCCACGGCAGCCGCGATGACTACCTGGCGCGGCTGCGCCAGGTCGGTTTCGAGGCCGAGCCCTGCACC TTCAGCCGCGACGGCATCCGCCTCTTGCAGGCCTGCGACGTCACCCTGCTGCCGGGTTTCGCTGAGGGCCACGTGAGCGTGCAGGACGAAGCCGCGCAAC TGGCCGCCGACCTGCTGCAACTGGCCCCCGGCCACCGCGTGCTGGATGCCTGCGCGGCGCCCGGTGGCAAGACCTGCCATTTGCTGGAAGCCGAGCCGGC GCTGAGCGAAGTAGTGGCCGTGGACCTGGAAGCCAAGCGCCTGGCGCGGGTACGCGAAAACCTCGATCGTCTGGGGCTCGAGGCCACCCTGATCGCCGCC GATGGCCGCGACACGGCCGCCTGGTGGGACGGCAAGCCGTTCCAGCGCATCCTCCTCGATGCGCCCTGCTCGGCCACCGGCGTGATCCGCCGCCATCCGG ACATCAAGCTGACCCGCAAGGCCGATGACATTCCGGCGCTGGCCACGCTGCAGGGCGAGCTGCTCGACGCGATGTGGCCGACCCTGGAAGTCGGCGGCAT CCTGCTTTACGCCACCTGCTCGACGCTGCCGACGGAAAACACCGAAGTCATCGAGGCCTTCCTGGCGCGTACGCCCGGTGCCCGCGAACTGGACATCGCC GGCCCGTTCGGTCTCAAGCAGCCCCATGGCCGCCAGCTGCTCGCCCAGCAGGACGGCCATGATGGTTTCTACTATGCCAAGCTGATCAAGATCGCAGCCG CTGGAGCAACCCGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGATCATCATCCTCGGCGCCGGCCAGGTCGGCGGCACCCTGGCCGAGCACCTGGCCAGCGAGGCCAACGACATCACCGTGGTGGACACCGACGGTGATCG CCTGCGCGCCCTCGGCGACCGCCTGGACATCCGCACCGTGCAGGGCAAGGGTTCGTTTCCGACCGTACTGCGCCAAGCCGGCGCCGACGATGCCGACATG CTGGTGGCGGTGACCAACAGCGACGAAGTCAACATGATCGCCTGCCAGGTGGCCTACACCCTGTTCCATACCCCGACGCGCATCGCTCGGGTACGCGAGG CAGCCTACCTGACCCGCGAGGCGCTGTTCGACAACGAAGCCATTCCGGTCGACGTATTGATCAGCCCCGAGCAGGTGGTGACCAACTACATCAAGCGCCT GATCGAATACCCCGGCGCCCTGCAGGTGATCGACTTCGCCGAGGGCAAGGCCCAGCTGGTCGGCGTCAAGGCGTACTACGGTGGCCCGCTGGTCGGCCAG
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| Amino Acid Sequence |
>16S rRNA methyltransferase
MNPRLAAARALAAVLEGKASLGTSLPPLLDKVEARDRGLAQDLAFGAARWQPRLELIAGKLLRKPFKEGDRDLEALLLVGLYQLFYTRIPAHAAIGETVG CVDKLKKTSAKGLLNAVLRNAQREGDNLIQELDRDPVLHTAHPRWLQKQLKAFWPEHWQAICAANNAHPPLILRVNRRHGSRDDYLARLRQVGFEAEPCT FSRDGIRLLQACDVTLLPGFAEGHVSVQDEAAQLAADLLQLAPGHRVLDACAAPGGKTCHLLEAEPALSEVVAVDLEAKRLARVRENLDRLGLEATLIAA DGRDTAAWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRKADDIPALATLQGELLDAMWPTLEVGGILLYATCSTLPTENTEVIEAFLARTPGARELDIA GPFGLKQPHGRQLLAQQDGHDGFYYAKLIKIAAAGATR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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