Pseudomonas sp. URMO17WK12:I11, H041_RS0119645
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I11 H041DRAFT_scaffold00003.3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAAGACCTGCTGCGCTGCAGTCGCGGTGAGCTGTTCGGCCCAGGTAATGCGCAACTGCCCGCGCCGAACATGCTGATGGTCGATCGCATCACCCACATCA GTGAAGAAGGCGGCAAGTACGGCAAAGGTGAATTGGTCGCCGAGCTGGACATCAATCCTGATCTTTGGTTTTTTGCCTGCCATTTCGAAGGCGACCCAGT GATGCCAGGCTGCCTGGGCCTCGATGCCATGTGGCAGCTGGTCGGCTTTTTCCTGGGCTGGCAAGGCCTGCCGGGCCGCGGTCGTGCACTGGGCTCCGGT GAAGTGAAGTTCTTCGGCCAGGTGCTGCCTACCGCCAAGAACGTCACCTACAACATTCACATCAAGCGCGTGCTCAAAGGCAAGCTGAACATGGCCATCG CCGATGGTTCGGTCAGCGTCGACGGCCGCGAGATCTACACCGCCGAAGGCCTGCGGGTCGGCGTGTTCACCTCCACTGACAACTTCTAAGGGTTATTCGC
|
|
| DNA Sequence for Gene |
>H041_RS0119645
ATGCGCCGCGTCGTTATCACTGGTCTGGGCATCGTGTCGTGCCTGGGCAATGACAAAGCTACCGTCACCGAAAACCTGCGCAACAGCCGTCCGGGTATCC GTTACAACCCGGAATACAAGGAAATGGGGCTGCGTAGCCAGGTTTCCGGCTCCATCGACCTCAACCTCGAAGAGCTGATCGACCGCAAGGTCTTCCGTTT CGTCGGGCATGCGGCTGCCTACGCCTACCTGGCGATGCAGGACGCCATCAAGGACTCGGGCCTGACCGATGAGCAGGTCTCCAGCCCACGTACCGGCCTG GTGGCCGGCTCCGGCGGTGCATCGACCCTGAACCAGATGGAAGCGCTGGATACTCTGCGCGAAAAAGGCGTCAAGCGTGTAGGCCCTTACCGGGTCACTC GCACCATGGGCAGCACCGTTTCGGCGTGCCTGGCGACGCCGTTCAAGATCAAGGGCATCAACTACTCGATCTCTTCCGCCTGCGCTACATCGGCTCACTG CATCGGCACCGCACTGGAGCAGATCCAGTGGGGCAAGCAGGACATCGTGTTCGCCGGCGGCGGTGAAGAAGAGCACTGGAGCCAGTCGTTCCTGTTCGAT GCCATGGGCGCCCTGTCGACCAAGCGCAACGAAACCCCGGAACTGGCCTCGCGTGCCTATGACGCGGACCGTGATGGCTTCGTCATCGCCGGCGGCGGTG GCATGGTGGTGGTCGAAGAGCTGGAACACGCTCTGGCCCGTGGCGCCAAGATCTACGCCGAGATCATCGGCTATGGCGCCACCTCCGACGGCTACGACAT GGTCGCCCCAAGCGGCGAAGGCGCCATCCGCTGCATGCAGCAGGCGCTGTCGACCGTCGACACGCCGATCGACTACCTGAACACCCACGGCACCTCTACC CCAGTGGGCGACGTTGCCGAAATGAAGGGTGTGCGCGAAGTGTTCGGCGAAAATGCACCGAAGATCAGCTCAACCAAGAGCCTGTCCGGCCACTCGCTGG GGGCTGCCGGTGTACACGAGGCGATCTACTGCTTGCTGATGATGGAAAACAACTTCATCGCTGGCTCGGCCAACATCGACGAACTGGACCCGGCGGTCGC TGACCTGCCGATCCTGCGCAAGACCGAAGAAAATGCCAAGATCGATACGGTCATGAGCAACAGCTTCGGTTTCGGCGGCACCAATGCCACCCTGGTGCTC AAGCGCTGGGAAGGCAAGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TTCGCTGACGCGCCAATAGAGAACGCCCCGACTGGTTCGGGGCGTTTTCATTTACGCTGGAAAACAGATCCGTTGGGCCCGACGCGACCTACGCTGTCAT TTACCCTTGGGCAGCACAGCCAGAAAGTTGTCCTTGGCCACGCGTCTGGCTACATCCTCGGGCAAGGCATCCAGAAATGGCCTGAAACTGTCCATCTCCT CTCCCAGGCTATCGAAGCGGCCGACCACATCCGAGCCCAGCATGAACCGCGTTGGGTAGCGTTCAACGAGCGCCAGCCAGGCTTTGCGTGGGACGTCCTG TTCATCGAGCAGGTAGGGCTTGAGCACACTCCACGACAGGTCCACGTACAGGTTCGGGTAGTCCTCGAGTAATCGCGTCAGCACCGGCAGTAGAAAATCC ATCTGTGTCTGATGCCGGTGAATTTCCATGCTGCTGCCGGCGTGTGCCCAGATGAAACGCGTATGCGGATGATTGCGCAGGGGCTCTTCGATCTCGGCCA
|
|
| Amino Acid Sequence |
>3-oxoacyl-ACP synthase
MRRVVITGLGIVSCLGNDKATVTENLRNSRPGIRYNPEYKEMGLRSQVSGSIDLNLEELIDRKVFRFVGHAAAYAYLAMQDAIKDSGLTDEQVSSPRTGL VAGSGGASTLNQMEALDTLREKGVKRVGPYRVTRTMGSTVSACLATPFKIKGINYSISSACATSAHCIGTALEQIQWGKQDIVFAGGGEEEHWSQSFLFD AMGALSTKRNETPELASRAYDADRDGFVIAGGGGMVVVEELEHALARGAKIYAEIIGYGATSDGYDMVAPSGEGAIRCMQQALSTVDTPIDYLNTHGTST PVGDVAEMKGVREVFGENAPKISSTKSLSGHSLGAAGVHEAIYCLLMMENNFIAGSANIDELDPAVADLPILRKTEENAKIDTVMSNSFGFGGTNATLVL KRWEGK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|