Pseudomonas sp. URMO17WK12:I11, H041_RS0114895
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I11 H041DRAFT_scaffold00019.19_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTCAATGCATCCCTGGATGCTTCGGTGAACACCTCGCAGCAAAGTGCATACGACTCTTCGTTCGAAAAAGCCTTCGACTCCAACTACGACAAGTCGCGC GAGTCGTCCTATAACCATTCGCGGGACTCGTCGTACACCAAGTCGCATGACTCTTCCTACGAGAACGCTTCGGCTTCGGCGTATGAAAAGTCTGGCGAAA CCTCCAGTCAGTCCTCCAACGACGTCGCCAAGAGCTACAGCGAAAGCAGCGCTTACGACTTGAGCAATACCGTGTCCTTCCAAGTGCTGACCCCGACCGG CTGGGCCAACCCTGTGACCAACACTGCAACCCTTAGCGGTTCGGTCAATGGCGGCAGCGGCAACCTGGGCGTGAACGTGGCGGCCGGTGTGGGCAACCAG CAGAGCAACTCGCTGGCCATCTCCAACACCTCGTTCTGATGCCAGACCCCAAGGCCCCCTTTTTGGGGGCCTATCTCCAACGCACCCAAAGGCGTCGATC
|
|
| DNA Sequence for Gene |
>H041_RS0114895
ATGCGTGTATTCGCCCTGGCGTTCCTGCTGTGCCTGGCCAGCATGGGTCAAGCAGCCCAGATGCCGCTGTCGGTCCTGCCTGGCGGCGCGGTGGTGTTCA AGCCCATCCAGAGCATGCGCGAACGCAAGTTCGCCGACTTGGTGCAACAGAAGACCGATTTCAGCTGCGGCGCCGCCGCGCTGGCAACCATCCTGCGTCA GGCCTACTGGCTGGACGTGGACGAACACCAGATCATCGAGGGCATGCTCACCCATGCCGACCAGAACCTGGTCCGCACCCAGGGGTTTTCGATGCTCGAC ATGAAGCGCTATGTGGAAAGCCTGGGCATGCGCGCCCGGGGTTACCGAGTGGCGCCCGAGACACTGAACAGCGTTCGAATCCCAGTGGTGGTGCTGATGG ACATCCGCGGCTACAAGCACTTTGTGGTCATGCAGAAGGTCGACCGGGGCTGGGTCTACATCGGCGATCCGGTGCTGGGGCACAAGCGTTACAGAACCGA GGACTTCCTAAAGGGCTGGAACGGCATCATCTTCGCGGTGATCGGCCAGGGCTACGACAAGCAAAACGCCCTGCTCGACCCTCCGCTGCCGCTGACGGCC AAAGGCCGCCTGGACGGCTTCACGCCGGTCAAGGATGCCGATCTGCTGGACTACGGCTTCATTCGAAGCGATTTCTTCTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGCCTCTTCCAAGAACAAGGTGCACGATGCGCCGGGGAGCATTGCATGAAGACCCCTATCTGGTTGGTTCTGGCCTGCATGACGGCCAGCCTGCCTATCC ACGCCGAAGTGCTGCACCCTATCGAGCTCAAGGACCAGGAACTGGCGAGCTTGCGCGGACGCTACGTGATGCCGGGTCGAATCGTGAGTTTCGGCATCGT CATGAGCAGCACCTGGCAGAACGCGCGCGGTGAAGTGATAGGCGCCAGCAGCACCTTGCAGGTGCAGCAGGCCACGATCAAGCCGCAATTCTACGTCTCG TTGATCGATGAGCGCGGCGCGCCGACGGCCCAGGGAAGTGCCCAGCCGGTTGCCCAGGGCAGCGGTACGGTGAGCGGCGGTGCCGGGCTTGGTACTACGC AGGGGGTGACCCAAGTGGTCCGCGCGGCCGGCGACGACAACAGTGCCTACAACAATGTGAACGTCAATGTGACCAAAGCCGACCAGGCTCCCACGGTGCA
|
|
| Amino Acid Sequence |
>peptidase C39
MRVFALAFLLCLASMGQAAQMPLSVLPGGAVVFKPIQSMRERKFADLVQQKTDFSCGAAALATILRQAYWLDVDEHQIIEGMLTHADQNLVRTQGFSMLD MKRYVESLGMRARGYRVAPETLNSVRIPVVVLMDIRGYKHFVVMQKVDRGWVYIGDPVLGHKRYRTEDFLKGWNGIIFAVIGQGYDKQNALLDPPLPLTA KGRLDGFTPVKDADLLDYGFIRSDFF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|