Pseudomonas sp. URMO17WK12:I11, H041_RS0108635
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I11 H041DRAFT_scaffold00007.7_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCTGGCGACAACGCAGCGTCGGTGCAACTGGTGCTCGAAGACGGCACCTTGTACAAGCAGGAAGGGCGCCTGGAGTTCTCCGAAGTGGCCGTGGACGA AACCACCGGCTCGGTCACCCTGCGTGCCATCTTCCCCAACCCTGACCACACCCTGTTGCCTGGCATGTTCGTGCATGCACGGCTCAAGGCGGGCGTGAAC GCCAATGCCATCCTGGCACCGCAGCAGGGCGTGACGCGCGACCTCAAGGGCGCCCCTACCGCGCTGGTGGTGAACAAGGACAACAAGGTCGAACTGCGCC AGCTCAAGGCCAGCCGTACCGTGGGCAGCGACTGGCTGATCGAGGAAGGCCTGAACCCAGGCGACCGCCTGATCACCGAAGGCTTGCAGTACGTGCGCCC AGGTGCCGAGGTCAAGGTCAGCGAAGCCACCAACGTCAAGAAGCCGGACAGCCCCAACCAGGGCAACGCAGCGAAAGCAGACGCCAAAGCGGAGTAAACC
|
|
| DNA Sequence for Gene |
>H041_RS0108635
ATGTCGAAGTTCTTTATTGATCGCCCGATCTTCGCCTGGGTGATCGCCTTGGTGATCATGCTGGTCGGCGCCTTGTCGATCCTGAAGTTGCCGATCAACC AGTACCCCAGCATCGCCCCACCGGCCATCGCCATTGCCGTGACCTACCCGGGCGCTTCGGCGCAAACCGTGCAGGATACGGTGGTGCAGGTGATCGAACA GCAGCTCAACGGTATCGACAACCTGCGTTATGTGTCGTCGGAAAGTAACTCCGACGGCAGCATGACCATTACTGCCACCTTCGAGCAGGGTACCAACCCC GACACCGCCCAGGTGCAGGTGCAGAACAAGCTCAACCTGGCCACCCCCCTGCTGCCGCAGGAAGTGCAGCAACAGGGTATCCGCGTCACCAAGGCCGTGA AGAACTTCCTGATGGTGATCGGTCTGGTGTCCGAAGACGGCAGCATGACCAAGGACGACCTGGCCAACTACATCGTCTCCAACATGCAGGACCCGATCTC GCGTACGGCCGGTGTGGGTGACTTCCAGGTGTTCGGCGCCCAGTACGCCATGCGCATCTGGCTCGATCCGGCCAAATTGAACAAGTTCCAGCTGACCCCG GTGGACGTCAAGACCGCCGTGGCTGCCCAGAACGTTCAGGTCTCCTCCGGCCAGCTCGGCGGCCTGCCAGCCGTGCCTGGGACGCAGCTCAACGCCACCA TCATCGGCAAGACCCGCCTGCAGACTGCCGAGCAGTTCGAGAAGATCCTGCTCAAGGTCAACAACGACGGCTCCCAGGTACGCCTGGGCGATGTGGCCCA GGTCAGCCTTGGCGGCGAGAACTATGCCGTCAGCGCCCAGTTCAACGGCAAGCCCGCCTCGGGCCTGGCCGTCAAGCTGGCCACGGGCGCCAACGCACTG GATACGGCCAAGGCCCTGCGCCAGACCATCGCCGACCTGGAGCCGTTCTTCCCGCCAGGGGTCAAGGCGGTATTCCCGTATGACACCACGCCGGTGGTCA CCGAATCGATCAGCGGGGTCATCCATACCCTGATCGAAGCCGTCGTGCTGGTGTTCCTGGTGATGTACCTGTTCCTGCAGAACTTCCGCGCCACCATCAT CACCACCATGACCGTACCGGTGGTTTTGCTGGGCACCTTCGGCATCCTTGCCGCCGCAGGCTTCAGCATCAACACCCTGACCATGTTCGCCATGGTGCTG GCCATCGGCCTGCTGGTGGACGATGCCATCGTGGTGGTGGAAAACGTCGAGCGTGTGATGTCCGAAGAAGGGCTGCCGCCCAAGGAGGCGACCAAGCGCT CCATGGAACAGATCCAGGGCGCGCTGGTGGGTATCGCCCTGGTATTGTCGGCCGTACTGCTGCCCATGGCGTTCTTCGGGGGCTCCACTGGTGTGATCTA CCGCCAGTTCTCCATCACCATCGTCTCGGCCATGGGCCTGTCGGTGCTGGTGGCGCTGGTCTTCACCCCGGCGCTGTGCGCCACCATGCTCAAGCCTTTG AAAAAGGGCCAGCACCATGAGGCCAAGGGTGGGTTCTTCGGCTGGTTCAACCGCAGCTTCGATCGCAGCGTCAACGGCTACGAGCGCAGCGTGGGGACCA TCCTGCGCAACAAGATTCCGTTCCTGTTGGGCTATGCCCTGATCGTGGCCGGCATGATTTTCCTGTTCACCCGCATTCCAACCGCGTTCCTGCCCGAGGA AGACCAGGGTGTACTGTTTGCCCAGGTGCAGACGCCGGCCGGCTCCAGTGCCGAGCGTACCCAGGCAGTGGTCGACCAGATGCGCGAATACCTGCTCAAG GACGAAGCCGACACGGTATCCTCGGTGTTCACCGTCAACGGCTTCAACTTCGCAGGCCGCGGCCAGAGCTCGGGCATGGCGTTCATCATGCTCAAGCCCT GGGGTGAGCGTACGGCGGAAAACAGCGTGTTCGGTCTTGCCCAGCGGGCGCAGCAGCACTTCTTCAGCTTCCGCGACGCCATGGTCTTCGCGTTCGCACC ACCAGCGGTGCTCGAGCTGGGTAACGCCACAGGCTTCGACGTGTTCCTGCAGGACCGCGGCGGTGTCGGCCATGCCAAGCTGATGGAGGCCCGCAACCAG TTCCTGGCCAAGGCTTCGCAAAGCAAGATCCTCAGCGGTGTACGCCCCAATGGCCTGAACGACGAACCGCAGTACCAGCTGACCATCGATGACGAGCGTG CCAGCGCCCTGGGCGTGACCATCTCGGACATCAACAACACCCTGTCGATTGCCTTCGGTGCCAGCTACGTCAACGACTTCATCGACCGCGGCCGGGTCAA GAAGGTCTACATCCAGGGCGAAGCCAATGCCCGGATGAGCCCGGAAGACCTGCAGAAGTGGTATGTGCGCAACGCCGATGGCGAAATGGTGCCGTTCTCT TCGTTCGCCAAAGGTGAATGGACCTACGGCTCGCCCAAGCTCTCGCGCTACAACGGCGTAGAAGCCATGGAAATCCTCGGTGCGCCTGCCCCTGGCTACA GTACCGGTGAGGCCATGGCCGAGGTCGAGCGCATCGCCGGCGAACTGCCAAGCGGCGTAGGTTTCTCCTGGACGGGCATGTCCTACGAGGAGAAGCTGTC TGGTTCGCAAATGCCGGCCCTGTTCGCCCTGTCGCTGCTGTTCGTGTTCCTGTGCCTGGCAGCGCTGTACGAAAGCTGGTCGATTCCGATCGCCGTGGTG CTGGTGGTGCCACTGGGCATCATCGGTGCGTTGATCGCTACCAGCCTGCGCGGGCTGTCCAATGACGTGTACTTCCTGGTCGGCCTCTTGACCACCATCG GCCTGGCGGCCAAGAACGCCATTCTGATCGTCGAGTTCGCCAAGGAATTGCACGAGCAGGGCCGCAGCCTGTACGACGCGGCGATCGAGGCGTGCCGCAT GCGTTTGCGCCCGATCATCATGACCTCGCTGGCCTTCATCCTCGGCGTGGTACCTTTGACCATCGCCAGCGGCGCTGGCGCCGGCAGCCAGCACGCCATT GGTACCGGCGTGATCGGCGGCATGATCAGTGCGACCGTGCTGGCCATCTTCTGGGTACCGTTGTTCTTCGTCGCAGTGTCGTCGCTGTTCGGCAGCAAAG AGCCGAAAAAAGATGACACCCCTGAAACTCCACGTTATGAGGCTGGGCAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCAAGTCTTTGTTGTCCCTGGCAGTCACCGCTTTCATCCTCGGCGGCTGCTCGCTGATTCCCGACTACCAGACCCCGGAAGCACCGGTGGCTGAGCAGTG GCCGCAAGGCCCGGCCTACTCGCCCACCCAGTCGGCGGACGTCGCTGCCGCTGAACAGGGCTGGCGGCAGTTCTTCAACGACCCGGCGCTGCAGCAACTG ATCCAGACCGCGCTGGTCAACAACCGGGACCTGCGCGTCGCGGCGCTGAACATCGACGCCTACCGCGCCCAGTACCGCATCCAGCGTGCGGACCTGTTCC CGGCGGTGTCGGCCAACGGCAGTGGCAGCCGTCAACGCATCCCGGCGAACATGTCGCAGACTGGCCAGTCGGGCATCACCAGCCAGTATTCGGCAACCCT GGGCGTCAGTGCCTATGAACTCGACCTGTTCGGCCGCGTGCGCAGCCTTTCGGAACAGGCGCTGGAGACCTACCTGTCCAGCGAGCAGGCGCGTCGCTCC
|
|
| Amino Acid Sequence |
>multidrug transporter
MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIAVTYPGASAQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNP DTAQVQVQNKLNLATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVGDFQVFGAQYAMRIWLDPAKLNKFQLTP VDVKTAVAAQNVQVSSGQLGGLPAVPGTQLNATIIGKTRLQTAEQFEKILLKVNNDGSQVRLGDVAQVSLGGENYAVSAQFNGKPASGLAVKLATGANAL DTAKALRQTIADLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMVL AIGLLVDDAIVVVENVERVMSEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGLSVLVALVFTPALCATMLKPL KKGQHHEAKGGFFGWFNRSFDRSVNGYERSVGTILRNKIPFLLGYALIVAGMIFLFTRIPTAFLPEEDQGVLFAQVQTPAGSSAERTQAVVDQMREYLLK DEADTVSSVFTVNGFNFAGRGQSSGMAFIMLKPWGERTAENSVFGLAQRAQQHFFSFRDAMVFAFAPPAVLELGNATGFDVFLQDRGGVGHAKLMEARNQ FLAKASQSKILSGVRPNGLNDEPQYQLTIDDERASALGVTISDINNTLSIAFGASYVNDFIDRGRVKKVYIQGEANARMSPEDLQKWYVRNADGEMVPFS SFAKGEWTYGSPKLSRYNGVEAMEILGAPAPGYSTGEAMAEVERIAGELPSGVGFSWTGMSYEEKLSGSQMPALFALSLLFVFLCLAALYESWSIPIAVV LVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKELHEQGRSLYDAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAI GTGVIGGMISATVLAIFWVPLFFVAVSSLFGSKEPKKDDTPETPRYEAGQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|