Pseudomonas sp. URMO17WK12:I11, H041_RS0108615
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I11 H041DRAFT_scaffold00007.7_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGACGACACCAGCTTGCGCGAATACTTCGATCGTGCCGACCTCAAGGCCCGCACCAGCCGTACCCTGCACGACGCCCCGTCGCTGTTCGCCTGCATCGAG CAAGTGCGTAGCCAGGGATGGTGCGTGGTCGACCAGGAACTCGAACAAGGCCTGCGCTCGGTGGCCGTGCCCGTCTACGACGCCTCAGGCCAGGTATTGG CAGCGCTGAACGTCAGTACCCACGTCGGGCGTGTACCGCGCAGTGAACTGGAGCAGCGGTTTCTTCCCGTACTGCTGGAAGCCAGCCAAGAGCTCAGCCA TCAGCTGTTTGGATAAGCGCGAAGGCTTTAGGATCATTACAGCCTGCTGACAAAGCGTTCGATAATCGCCCAGTTCAGCCTTGAGCTAATTGTGACGGCC CCGCCTTTGTCCCTAACCTGATGCCCACCCGGCGGACAGGTTGCAGTGACCCGATTGTGCCTGTATCGCCGGCGCCCATGGTCACTGCAGGAGACGCAAG
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| DNA Sequence for Gene |
>H041_RS0108615
ATGCGCGAGGTCTATATTTGTGATGCCGTTCGCACGCCCATTGGCCGGTTTGGTGGCGCCCTTGCCAGCATCCGGGCTGACGACTTGGCGGCGGTACCGC TCAAGGCATTGATCGCGCGCAACCCGGGTGTGCACTGGGCGCACCTGGACGAGGTGTTTTTCGGTTGTGCCAATCAGGCGGGCGAAGACAACCGTAACGT GGCACGCATGGCGTTGCTGCTGGCCGGGCTGCCTGAATGCGTGCCGGGTGTCACCCTCAACCGGTTGTGCGCTTCGGGCATGGAGGCCGTCGGCGCGGCG TTCCGCGCCATCGCCTGTGGCGAAATGGAGCTGGCCATCGCGGGCGGCGTGGAGTCGATGTCGCGAGCGCCGTTTGTCATGGGCAAAGCGCAAAGCGCTT ATTCACGCACCATGCAACTGGAAGACACCACCATCGGCTGGCGTTTCGTCAACCCGCTCATGAAAGCGCAATACGGCGTGGATGCCATGCCGCAGACGGC GGACAACGTAGCTGACGACCATGGCATTTCCCGCGCCGACCAGGATGCATTTGCCTTGCGCAGTCAGCACAAGGCCGCAGCGGCGCAAGCTGCCGGGTTT TTCGCCGAGGAAATCGTGCCGGTGTGCGTCGCGCACAAGAAGGGTGAGACCTGGGTAGAGCACGATGAGCACGTGCGACCCGATACCACCCTTGAGGCCT TGGCCAGGCTCAACCCCGTCAATGGCGTGGGCAAAACGGTGACGGCGGGCAATGCATCGGGGGTCAACGATGGCGCGGCAGCGATGATCCTGGCGTCTGC CGAGGCCGTGCACACCCATGGCCTGACCGCTCGCGCCAAGGTACTGGGCATGGCCAGTGCGGGGGTGGCCCCGCGGGTCATGGGCATCGGGCCGGTGCCT GCGGTACGCAAGCTGATCGAGCGACTGGGCATCGACATCAGCGCATTCGATGTCATTGAACTCAACGAGGCCTTCGCCAGCCAGGGGCTGGCCGTTCTTC GCGGGCTAGGGGTGGCGGACGATGCGCCCCAGGTCAACCCCAACGGCGGTGCCATCGCACTGGGCCACCCGCTGGGCATGAGTGGTGCGCGCCTGGTACT GACGGCGCTGCACCACCTTGAGCGCACAGGAGGGCGCAAAGGCTTGGCCACGATGTGCGTAGGTGTCGGTCAAGGGCTGGCGCTGGCCATTGAACGGCTT TGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGGAGCCTGCGCCCGGGTGCCTCAGAGATGAGGGCAGCCGGCAGCGCCTCGCTGCACTTGATTGCACACCACGCGGAACGACTGTGTAACCAGGTATGTC TAGACTTACCTTGTATTCCTCCAGGAGCACGACTGACATGACCACCCCTCACTACACTGGCGAGGAGCGTAGCAAACGCATCTTCGCCATCGTCGGCGCC TCTTCAGGCAACCTGGTGGAATGGTTCGACTTCTATGTCTACGCCTTCTGCGCCATTTATTTTGCTCCGGCGTTCTTTCCCTCAGATGACCCGACCGTGC AACTGCTCAATACCGCCGGTGTGTTTGCCGCGGGCTTTCTGATGCGGCCTATCGGCGGCTGGATCTTCGGCCGTCTGGCCGACCGCCACGGTCGCAAGAA CTCGCTGATGATCTCGGTACTGATGATGTGTTTCGGGTCCTTGGCCATCGCCTGCCTGCCCACTTACGCCAGTATTGGCACATGGGCGCCGGCATTGCTG
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| Amino Acid Sequence |
>beta-ketoadipyl CoA thiolase
MREVYICDAVRTPIGRFGGALASIRADDLAAVPLKALIARNPGVHWAHLDEVFFGCANQAGEDNRNVARMALLLAGLPECVPGVTLNRLCASGMEAVGAA FRAIACGEMELAIAGGVESMSRAPFVMGKAQSAYSRTMQLEDTTIGWRFVNPLMKAQYGVDAMPQTADNVADDHGISRADQDAFALRSQHKAAAAQAAGF FAEEIVPVCVAHKKGETWVEHDEHVRPDTTLEALARLNPVNGVGKTVTAGNASGVNDGAAAMILASAEAVHTHGLTARAKVLGMASAGVAPRVMGIGPVP AVRKLIERLGIDISAFDVIELNEAFASQGLAVLRGLGVADDAPQVNPNGGAIALGHPLGMSGARLVLTALHHLERTGGRKGLATMCVGVGQGLALAIERL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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