Pseudomonas sp. URMO17WK12:I11, H041_RS0108555 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I11 H041DRAFT_scaffold00007.7_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGACCGCCACCAGTTGCCTTTTGTCCTGAAGGTATTCAATCGCTTCAATGGGCAGGAGATGGGCCAGCTGGGCAATGCCTCTGAAAACGGCATGATGCTG ATCAGCGAGCTGCCGGTCATGGTGGGCCCCGATTACGAATTGCAGTTGCGCCTGCCGTTGACGGGGGGTGGGCATCAGTTCGTCAACCTTACGGCCAGTT GTCTGTGGTGCCGCGAGGACCAGACGCCTGGGTACTACGATTCGGGCTTCATGTTGTTGCAGGCGCCTCGCGAATACGACGACTTTGTGCGCTCCTTGCA GGAGTACTTCAGTTTTCGCGCCTCCTCTACCTCGGTTTGACAGGTCGGTATTGCCGATTGCTGACGCCCGTCCATGAGATCGGTCCGGGTCAGTAGGGGC TGTGTAGCACGGCCTACTGGCCCCAAGTCGCTTCATTGGCCCGACGTCAGGCCCGGCTCAACGCGTTAGAATCAGGGCGAACCTGCAACAGGACGGCCCT
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| DNA Sequence for Gene |
>H041_RS0108555
|sbcB
GTGACTTCAAGCATTTTCTGGCATGACTACGAAACCACCGGCATCAACCCGCGCTGCGACCGGCCCGTGCAGATGGCAGGGGTGCGTACTGACCTCGACC TGAATGAAATCGCCGAACCGATCAACCTCTATTGCCGCTTGTCGGATGACATATTGCCGCATCCTGCTGCCTGCCTGGTGACGGGCGTCACGCCGCAACA GTTGGCCGAAAAAGGACTCGGCGAGGCCGAGTTCATGGCGCGCGTGCATGCCGAACTGGCGCAACCCGGTACCTGCGGTGCCGGCTACAACACGCTGCGT TTCGACGACGAAGTCACGCGCTACAGCCTATACCGCAACTTCTTCGACCCTTACGCACGCGAGTGGCAGGGCGGTAACAGTCGCTGGGACCTGATCGATA TCGTCAGGACCGCGTTCGCGTTGCGTCCCGATGGCATTCAATGGCCCCAGCAGGAAGGGCGCATCAGTCTGCGCCTTGAGTTGTTGAGCAAGGCCAACGG CCTCGAACATGGCCACGCACACGAGGCACTCTCCGATGTTCGGGCGACCATTGCCCTTGCCCGGCTGATACGCGAGAAGCAGCCAAAGTTGTACGACTGG TTGTTTCAGCTTCGCAGCAAGCACAAGGTCATGGAGCAGATACGGCTGCTGCAGCCGATGGTGCATATTTCTGGACGTTTCAGTGCTGCGCGTCATTACT TGGGCGTCGTGTTGCCTTTGGCCTGGCACCCTAAAAACCGCAATGCATTGATTGTTTGCGATCTGCATCAGCAAACCCTGCCGCTGATTGAAGAGCGCGC CGAAACTTTGCGCCAGCGGCTCTATACCCGTCGAGAAGCCCTTGGCGAAGGCGAGCTCCCTGTACCGCTCAAACTCATCCAGATCAACCGCTGCCCGGTG GTGGCGCCCCTTTCTGTATTACGACCGGCTGATCAAGCGCGTCTGGGGATTGACCTGGACGCATTACAACGACGCGCCGAGGCATTGGTCCGTCAACAGG ATCAATGGCAGGAAAAACTGGCACCTATTTATACGCAAGACGGTTTTGCGGCCAGTGACGATCCTGAACAGCAATTGTATGAGCGGTTTCTCGGCGAGCG TGACCGGCGGTTATGCGATCAAGTGCGTTCGCTGTCGCCCGCCCAGTTGGGCGCCGGGCAGTGGATGTTCGATGATCCACGCTTGGCCGAATTGCTCTTT CGTTACCGTGCACGTAACTTTCCCGACACCTTGAACGATGAAGACAGGGCGCGATGGCAGGATTTTTGTAGGCAACGTCTGACTGACCCCCGCTGGGGTG CGCCCAATACCCTGGGTGATTTCGCCCAGGCCCTGGCCGCAGCCTGGCCTGGCGCGGGTGAAGCAGGACAGCAAGTGCTGACAGCCTGGCAACTGCATGC CAACGCGTTGCAAACGAGGTTTGCCGTCAATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAGCCCATAAAAAAACGCCGGTTATTAACCGGCGTTTTTTACGTATATCAAATAGCGAGCAATGGACAATCAGTCCAGCAGGGTTGCCCAGCTTTCTACC TCGTCACCGCCCCATTGAGCTTTCCACTCTTTCAGGGTTTTGTGGTTGCCACCTTTGGTTTCGATGACTTCACCGTTGTGCGGGTTTTTGTATTGCTTGA CCTTGCGCGCGCGTTTGGTGCCAGTGGTTTTCACGGCGCCACGCGGCAGTTTGCTCATCTTGGCATCAGGGTCGAGCAGGGCAATGATGTCACGCAGCGA CTTGGAATATTCGCCCATCAGGGTGCGCAGTTTGCCTTCGAACTCCAGTTCTTTTTTCAGCTTGTCATCCTGAGACAGGTTGGCCAGGCGGGCCTGAAGT TCCTTGATGGCTTCTTCGGTAGCACGGTACTCGTTGATCAGGGACATGGAGTGTTCCTTAATGCGTGTTCGGAAATGTGTGGAGCAATAGTAAACAGGCA
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| Amino Acid Sequence |
>exonuclease I
MTSSIFWHDYETTGINPRCDRPVQMAGVRTDLDLNEIAEPINLYCRLSDDILPHPAACLVTGVTPQQLAEKGLGEAEFMARVHAELAQPGTCGAGYNTLR FDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDIVRTAFALRPDGIQWPQQEGRISLRLELLSKANGLEHGHAHEALSDVRATIALARLIREKQPKLYDW LFQLRSKHKVMEQIRLLQPMVHISGRFSAARHYLGVVLPLAWHPKNRNALIVCDLHQQTLPLIEERAETLRQRLYTRREALGEGELPVPLKLIQINRCPV VAPLSVLRPADQARLGIDLDALQRRAEALVRQQDQWQEKLAPIYTQDGFAASDDPEQQLYERFLGERDRRLCDQVRSLSPAQLGAGQWMFDDPRLAELLF RYRARNFPDTLNDEDRARWQDFCRQRLTDPRWGAPNTLGDFAQALAAAWPGAGEAGQQVLTAWQLHANALQTRFAVN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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