Pseudomonas sp. URMO17WK12:I11, H041_RS0105665
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I11 H041DRAFT_scaffold00005.5_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCACCGATTGCCGCGACGACATGACCATCGTCAAGGAAGAGATTTTCGGCCCGGTCATGAGCATCCTCAGCTACGAGACCGAGGAAGAAGTGATCCGCC GCGCCAACGACACCGAATACGGCCTGGCAGCCGGCGTGTGCACCAACGACCTGAACCGTGCCCACCGCATCATCCACCAGCTTGAAGCGGGCATTTGCTG GATCAACGCCTGGGGCGAGTCCGCAGCCGAAATGCCGGTGGGTGGCTACAAGCAATCGGGCGTTGGTCGCGAGAACGGCATCAGCTCGCTGGCCCAATAC ACCCGCATCAAGTCGGTACAGGTCGAGCTGGGCGACTACGCGTCGGTCTTCTGACCGCCCGTAGCACGCCAGCCCATGCTGCAGGACAGCGCCGGTCGTT GACCGACCGGCCCTTGCAGCACTCATCCATTTGCGCGTGAGGCCAGGCTGCACCCAGGTGCAGCGCCAGACGCGCAACTGCTTCCGGAGGAAGCTTCCCC
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| DNA Sequence for Gene |
>H041_RS0105665
ATGGAATACGATTACATCATCGTTGGTGCCGGCTCTGCCGGTAACACCCTGGCTACTCGCCTTACCGAAGACGCAGGCACCACCGTACTGCTGCTCGAAG CGGGCGGCCCTGACTATCGCTTCGACTTCCGCACCCAGATGCCAGCCGCCCTGGCCTTCCCGCTGCAAGGCCGTCGCTACAACTGGGCCTACGAGACCGA CCCGGAGCCGCACATGGACGGCCGCCGCATGGAATGTGGCCGTGGCAAGGGCCTGGGTGGCTCCTCGCTGATCAACGGCATGTGCTACATCCGCGGCAAC GCCCTGGACTTCGATGGCTGGGCTGAGCTGCCAGGCCTGGAAGACTGGGCCTACCTGGACTGCCTGCCGTACTTCCGCAAGGCCGAAACCCGCGACATCG GCCCCAACGACTATCACGGTGGCGACGGCCCGTTGAGCGTGGCCACGCCCAAGGCGGGTAACAACCCGCTGTTCAACGCCATGGTCGAAGCTGGCGTACA GGCCGGCTACCCGCGCACCGAAGACCTCAACGGCTACCAGCAAGAAGGCTTCGGCCCGATGGACCGTTCGGTGACCAAGAATGGCCGCCGCTCCAGCACT GCCCGCGGTTACCTGGACCAGGCCAAGAAACGCCCCAACCTGACCATCGTGACTCACGCCCTGAGCGACCGCGTACTGTTCGACGGTAAGCGCGCCATTG GTGTGAGCTACCTGGTGGGCGACAGCGAAGAGCGCGTCGAAGCACGCGCGCGCAAGGAAGTGATCGTCAGCTCCGGCGCCATCGCCACGCCGCAACTGCT GCAGCGCTCCGGTGTAGGCCCGCGCGCCCTGCTCGAAAGCCTGGACATCCCGGTCGTTCACGACCTGCCAGGGGTTGGCGAAAACCTGCAGGATCACCTG GAACTGTACCTTCAGTACGCGTGCACCCAGCCCGTATCGCTGTACCCATCGCTGCTGTGGTGGAACCAGCCGGCCATCGGCGCGGAGTGGCTGTTCAACG GTACCGGTATCGGGGCCAGCAACCAGTTCGAGGCCGGCGGTTTCATTCGCTCGCGCCCTGAATTCAAATGGCCGAACATCCAGTACCACTTCCTGCCGGT TGCCATCAATTACAACGGCTCCAAGGGCGTCAAGGAACATGGCTTCCAGGCGCACATGGGCTCGATGCGCTCGCCTAGCCGCGGCCGCGTGCAGGTCAAG TCCAAGGACCCACGCCAGCACCCGAGCATCCTGTTCAACTACATGGCCACCGAGCAGGACTGGGAAGAATTCCGTGACGGTATTCGCCTGACCCGCGAAA TCATGGCCCAGCCGGCGCTGGACCCGTACCGCGGTCGGGAAATCAGCCCAGGCGCGCATGTGCAGACCGATGAAGAGCTGGACAAATTCATCCGTGAGCA CGCCGAAACCGCCTACCACCCATCCTGCTCGTGCAAGATGGGTACCGACGACATGGCGGTGGTCGATGGCGAAGGCCGCGTGCATGGCATGCAGGGCCTG CGTGTAGTGGATGCGTCGATCATGCCGATCATCATCACCGGCAACCTCAACGCCACCACCATCATGATTGCCGAGAAAATCTCGGACAAGATCCGTGGTC GCAAGCCGTTGCCGCGCAGCACTGCCAAGTACTACGTGGCCAACGACGCGCCGGTCAAAGGCAAGCCCATGCGCGAAGTGAAGCAGGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAGCAAAAGGGGCTGCCTGGCAGCCCCTTTTTTTTCGGGTCAGCGAACGACGATTCCGCGCGCTGCCATATAGGCCTTGGCCTCAGGCACCGTGTACTC CCCAAAATGGAAGATGCTGGCAGCCAACACGGCACTGGCATGCCCTTGCAAGATGCCATCGGCCAGGTGCTGAAGGTTACCCACCCCGCCCGAGGCGATC ACCGGGATGCTCAACGCATCGCTGATGGCACGGGTCACGCCCAGGTCGAACCCGTTCTTCATGCCATCCTGGTCCATGCTGGTCAGCAGGATCTCGCCCG CGCCCAGGCCTTCCATCTTCTTGGCCCACTCTACCGCGTCCAAACCGGTCGGCTTGCGTCCGCCGTGGGTGAAGATTTCCCAGCGCGGCGTTTCGCCAGG GCCGGATACCTGCTTGGCATCGATGGCCACGACAATGCACTGCGAGCCGAAACGATCGGCGGCCTCGCCCACGAATTCCGGGTTGAACACGGCGGCAGTA
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| Amino Acid Sequence |
>choline dehydrogenase
MEYDYIIVGAGSAGNTLATRLTEDAGTTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYNWAYETDPEPHMDGRRMECGRGKGLGGSSLINGMCYIRGN ALDFDGWAELPGLEDWAYLDCLPYFRKAETRDIGPNDYHGGDGPLSVATPKAGNNPLFNAMVEAGVQAGYPRTEDLNGYQQEGFGPMDRSVTKNGRRSST ARGYLDQAKKRPNLTIVTHALSDRVLFDGKRAIGVSYLVGDSEERVEARARKEVIVSSGAIATPQLLQRSGVGPRALLESLDIPVVHDLPGVGENLQDHL ELYLQYACTQPVSLYPSLLWWNQPAIGAEWLFNGTGIGASNQFEAGGFIRSRPEFKWPNIQYHFLPVAINYNGSKGVKEHGFQAHMGSMRSPSRGRVQVK SKDPRQHPSILFNYMATEQDWEEFRDGIRLTREIMAQPALDPYRGREISPGAHVQTDEELDKFIREHAETAYHPSCSCKMGTDDMAVVDGEGRVHGMQGL RVVDASIMPIIITGNLNATTIMIAEKISDKIRGRKPLPRSTAKYYVANDAPVKGKPMREVKQG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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