Pseudomonas sp. URMO17WK12:I11, H041_RS0102675
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I11 H041DRAFT_scaffold00001.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TAAAGAGAACGAACCCTTCGACGTAGCTCTGCGTCGTTTCAAGCGCTCCTGCGAAAAAGCCGGTGTACTGGCTGAAGTTCGTAGCCGCGAGTTTTACGAG AAGCCGACCGCAGAGCGTAAGCGTAAGGCAGCTGCCGCTGTCAAACGTCACGCCAAGAAAGTTCAGCGCGAACAGCGCCGCGCCGTTCGTCTGTACTAAT ACAGACGTTCATCGCAAAGCTTCTGCCCTGCCCGGTTAACCGCCGGGCGATGGCAGTGGTCGTTTCAAACTTGAGCAACTTGCTCAAGGCTCCATGCACC TGTTCAAGCACCGTGCATGCGGGCAACCTGCCTGAAACGTCAGAACTGGTCATTGTGCTGTAGGCCAGGCGTGCACGTCCGACTGACGGGCCTTATGGGC CGGCGACGAGCACTTATTCCCCGCATAGCTTCAAGCATCACCCGCTGCATTCGGCGCGTGAGCGATTAGACTTGCCAGTTGCCAGATTGACGAGACTGCC
|
|
| DNA Sequence for Gene |
>H041_RS0102675
ATGGCCGGGCTGATTCCCCAGAGTTTCATTGACGACCTCATCAACCGCCTCGACATCGTCGACGTGGTCAGCTCCCGTGTCCAACTGAAAAAAACCGGCA AGAATTATTCTGCCTGCTGCCCGTTCCACAAGGAAAAGACCCCGTCCTTCACCGTGAGCCCCGACAAGCAGTTCTATTACTGCTTTGGTTGCGGCGCCGG TGGCAATGCCCTTGGCTTCGTCATGGACCACGACAACCTGGATTTTCCCCAGGCCGTCGAGGAACTGGCACGCGCGGCAGGCATGGAAGTCCCGCGCGAG CAAGGCCGGCGCGACCAGAAACCGCGCCAGCCGACCGATTCCCCGTTGTATCCGCTGCTGGACGCCGCCTCGGAGTTCTACCGCCAGGCCCTGCGCAGTC ACCCGACCCGCAAGGCGGCGGTGGAATACCTCAAGGGCCGCGGCTTATCCGGCGAAGTGGCGCGGGATTTTGGCCTGGGTTTCGCGCCGCCGGGCTGGGA CAACCTGCTCAAGCACCTGGGTGCCGACACGCTGCAGCAGAAGGTCATGATCGATGCCGGCCTGCTGATCGAGAATGCCGAAACCGGTAAACGCTATGAC CGCTTCCGCGATCGGGTGATGTTCCCGATTCGTGACAGCCGTGGCCGTATCATCGCCTTCGGCGGCAGGGTGCTAGGCGACGACAAGCCCAAGTACCTGA ACTCCCCTGAAACGCCCGTGTTCCACAAGGGCCAGGAGCTGTACGGGCTGTACGAGGCCCGCAAGCACAACCGCAACCTCGACGAAATCATCGTGGTCGA GGGCTACATGGACGTGATTGCCCTGGCCCAGCAGGGCTTGCGCAACGCCGTGGCCACCCTGGGCACTGCCACCAGCGAAGAGCACCTCAAGCGCCTGTTT CGCGTGGTCCCGAGCGTACTGTTCTGCTTCGACGGCGACCAGGCCGGGCGCAAGGCGGCCTGGCGGGCGCTGGAGTCCGCCCTGTCGAACTTGCAGGACG GCCGTCGCGCGCGCTTTCTGTTCCTGCCCGAAGGCGAAGACCCGGACAGCTTGGTCCGCGCCGAAGGCACCGACGCCTTCATGGCCCGCATCAATCAGCA CGCCCAACCGCTGGCCGATTACTTCTTCGAGCAGTTGAGCATCGAGGCAGACCCTCGCTCGCTCGAGGGCAAGGCGCACATGGCGACCCTGGCTGCACCG TTGATCGAAAAAATTCCGGGCGCCAACCTGCGTCAGCTGATGCGCAACCGCCTGCGGGACATCACCGGGCTCGATCCGCAGCAGGTTGAGCAACTGGCCC AGCAGGCCCCCGCGGCGCCCAGCGCAGACTACGATCCAGGCTATGACTACGACGCCATGGTCAGCTACACGCCTGATTACGGCGACATGCCGCAGCCCGA TTATGCTGGCGCCCATCAGGAACAAGCCTGGACGCCAAAAAAGGCCGGCGGCAAGAAACCCTGGAGCGACAAACCCTGGGACAAGCATCGCAAGGGCGGC AAGCCGTGGCAGCGTGACGAGCCCCCGCCCCGCGTGCCGGCACCGGTCGAACCGCCTACGCTGGCGGCGCTGCGTACGCTGCTGCACCACCCGCTGCTGG CCGGCAAGGTGGAGGACGCCAGCCATTTTGCCGACGAAGAACAGCTCTACAGCCAACTGCTGGTGGCATTGATCGAAGCTGCACAGAAAAATCCTGGGCT AAGCTCAATGCAGCTGATCGCACGCTGGCATGGCACCGAACAAGGTCGCCTGCTGCGGGCCTTGGCGGAGAAGGAATGGTTGATCGTGGCCGACAACCTT GAACAACAGTTTTTCGACACCATTACTAGCTTGTCCGCTCGCCAACGTGAGCGAAGCCTGGAACAACTGCTCAGGAAATCCCGTCAAAGCGAATTGACCA GCGAGGAAAAAACCCAGCTTCTCGCCTTGTTGAGCCGGAATGTTCCCGCACAAAACCCGACCTCATCTGGCGCGTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGTCCATGCTCGGGTATAATCCTCGGCTTGTTTTTTGCCCGCCAAGACCTTCAGTGGATAGGGTGTTATGTCCGGAAAAGCGCAACAGCAGTCTCGTATC AAAGAGTTGATCACCCGCGGTCGTGAGCAGGGCTACCTGACTTACGCGGAGGTCAACGACCACCTGCCTGAGGATATTTCAGATCCTGAACAGGTGGAAG ACATCATCCGCATGATCAACGACATGGGGATCAACGTATTCGAGAGTGCTCCGGATGCGGATGCCCTTCTGTTGGCGGAAGCCGACACCGACGAAGCCGC GGCCGAAGAAGCCGCTGCTGCGTTGGCGGCAGTTGAGACCGATATCGGCCGCACGACCGACCCGGTACGCATGTACATGCGTGAAATGGGTACGGTCGAG CTGCTGACCCGTGAAGGCGAGATCGAAATCGCCAAGCGGATCGAGGAAGGCATTCGTGAAGTCATGGGCGCCATCGCCCACTTCCCGGGCACTGTCGATT
|
|
| Amino Acid Sequence |
>DNA primase
MAGLIPQSFIDDLINRLDIVDVVSSRVQLKKTGKNYSACCPFHKEKTPSFTVSPDKQFYYCFGCGAGGNALGFVMDHDNLDFPQAVEELARAAGMEVPRE QGRRDQKPRQPTDSPLYPLLDAASEFYRQALRSHPTRKAAVEYLKGRGLSGEVARDFGLGFAPPGWDNLLKHLGADTLQQKVMIDAGLLIENAETGKRYD RFRDRVMFPIRDSRGRIIAFGGRVLGDDKPKYLNSPETPVFHKGQELYGLYEARKHNRNLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSEEHLKRLF RVVPSVLFCFDGDQAGRKAAWRALESALSNLQDGRRARFLFLPEGEDPDSLVRAEGTDAFMARINQHAQPLADYFFEQLSIEADPRSLEGKAHMATLAAP LIEKIPGANLRQLMRNRLRDITGLDPQQVEQLAQQAPAAPSADYDPGYDYDAMVSYTPDYGDMPQPDYAGAHQEQAWTPKKAGGKKPWSDKPWDKHRKGG KPWQRDEPPPRVPAPVEPPTLAALRTLLHHPLLAGKVEDASHFADEEQLYSQLLVALIEAAQKNPGLSSMQLIARWHGTEQGRLLRALAEKEWLIVADNL EQQFFDTITSLSARQRERSLEQLLRKSRQSELTSEEKTQLLALLSRNVPAQNPTSSGA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|