Pseudomonas sp. URMO17WK12:I3, H038_RS0122030
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I3 H038DRAFT_scaffold00003.3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGGTTGCTCGTGGCGGTCGGTCAACTCGCCGAGCAGGTTCAGCAGGCGTTCGGCGTCATCGAATACCTCGGCGCGGCCATAGGCATGCACGGCGATGT AGTTCCAGGTCGGCACCACCTTGCCGTGCTCGGCCTTGGCCGGGTACCAGGAGGGGCTGACGTAGGCATCGGCGCCGCCGAACACCACCAGGACCTCGCC GCCTTCTGCCAGTAGCCGGGCATGGGGGGTGGCCCGCGCCAGGTGGCCATACAGGGTGCCGTAGGGGCCTTCTTCGGCGCGCAGCAGCAAAGGTAGGTGG CTGGCCTGCAGGCCATGTTCGCCAGGGCTGATGAGGGTCGCCAGGCGGCAGGCGTGGATTTCCCGGTGCAGGGTGGCGGGGTCGTTCTGGCGAAAGGCGG GTGGCGTGTACATGGGGCGTTCCTTGGCTGGATGCGCCATCCTAGAATTACGATTGGTCTGTTGTAAGATCCATTTCCCGTGACTTTCATGGAGCCAATC
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| DNA Sequence for Gene |
>H038_RS0122030
ATGGCTACCTCGACGCCGCTACCCGTCGACCTCTCGGGCCTGTGCCTGCAACCTGGTGCGGGCTTGTCGCGTCAGCTGTACCAGGCGCTGCGCGAACGCA TGCTCGACGGACGCCTGCCCGGTGGCACGCGCCTGCCGGCCAGCCGTCAGTTGGCCGAGCTGCTCGGTGTGTCGCGCAACACCGTCAACCGCGCGCTGGA TCAGCTGTACGCCGAGGGCTACGTGCAGGCGCGGGTCGGCGATGGCACCTACGTGGCTGACCTGGAAGCCAGCGCGCCGTTGCCCGCAGCAATGCCGACG AGCCAGGCGAGCAGCAGCGCCTTGCAACGATTGGAGAGCTTTCATCTGCCGCCGCATTTGCCTGGGCCGCCGCGGGCCTTTCGCGTCGGGGTGCCGGCCT TCGACCTGTTTCCCTATGAAACCTGGGCACGTCTGGCCGCACGTTTCTGGCGCCGGCCGGCGTCTGCGTTGCTGGGATATGGCGACCCGGCGGGCGATGC GCAGCTGCGCGAGTTGATCGCCTCCTACCTGCGCAGCAGCCGTGGCCTCAAGTGCGACCCTGGGCAGATCGTTATCACTTGCGGCGCCCAGCAGGCGATC AGCCTATGCACGCAATTGCTGCTCGATCCGGGTGACCGGGTGGCGATGGAAGATCCGGGCTACCGCGCCGCCGCACACACATTCAATGTCGCCGGTGCTC AGCTTGAAGGCATTGGCGTCGACAGCGAGGGGCTGGATGTCGCCGCGCTGGAGCGGGCAGGGCCGTGCCGGCTGGCTTATGTCACGCCGTCGCACCAGTA CCCGACCGGGGTGACGCTGTCGTTGCCCAGACGTCTGGCCCTGCTCGACTGGGCCGAACGCAACGATGCCTGGATCATCGAGGACGATTACGACGGCGAG TACCGTTACAGCGGCACGCCGCTGGCGCCACTCGCAGCCCTGGATCGGGGCCAGCGCGTGCTGTACGTCGGCACCTTCAGCAAGATCGTGTTTCCGGCGT TGCGTCTGGGCTATCTGGTGGTGCCGCCGCGCCTGGCCCAGGCCTTCGCCCGCCGTCGCGGCGTGGATATGCGCCACTCCGATATCGGCACCCAGGCGGT GATGGCCGAGTTCATCGCCGCCGGGCATTTCCAGCGGCATATCCGCCGTATGCGCAACGCCGCCCGGGCGCGTCGCGATGCCTTGCTGGTCGGTTGGCCG GATGAGGTGCCTGGCTGCTCAGCGCTGCCCGAGGTCCACGCCGGTCTGCACCTGAGCGTGCGCTGCGAGAGCCTGGCCCGCGAGCGTGAACTGATCGCCG CGGCTGCCACCGTGGGGGTGGAAATCAACCCGCTGAGCGTGCAATGGCTGCCAGAAGGGCGTACATCGGCGGATCAGCGTGCCGGGCTGGTGATGGGTTT TGCCGCAGTGCCGGAGCGGGCCATCGGTGAGGCGCTGCAGGCCTTGCTCCAGGCGTGGAAGTTGCCGGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACTCAGATCTGCCGCTGCTTGGGTTTCTTCTCGTCATTTGGCGGTTCGATACCCCAGTCGCCATCCAGGTACCAGTCTTCGCCGAACAGCTCGATGGGGT GTTGGGTTCGGCTGGCGCCGTTGCCGCATTCCAGGTCGGCGGCGCTGCAGTAACGGTCGCAACCCCAGCACACACGCTCGGGGTTGCTCGGTTGTAGGGG AAATTTCTTGGCCATCTCGCGTACTCCGCTGGACGTCGATCCCAGCCTAACGCGATAGGGATGCAGCCTCTTGACCAGGATCAAGAGCGATCCCGCTCAA GAGACCAGCTGTCAGGCAGGGCGCGGCTCTTCGGCGTTTTCCTGGCCGGCGTTCTGGCGCAGCTTCTTGGCGCGTTTTTCCAGCACCAGGTAGACCACGC AGGCCACCGCCAGCGGCAGCAGGAAGTAGATGGCCCGGTAACCGATCAGCGCGGCGACGATGCTGCCCTTGGACATCTCGTGCTGCAGCATGGCGATGAA
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| Amino Acid Sequence |
>GntR family transcriptional regulator
MATSTPLPVDLSGLCLQPGAGLSRQLYQALRERMLDGRLPGGTRLPASRQLAELLGVSRNTVNRALDQLYAEGYVQARVGDGTYVADLEASAPLPAAMPT SQASSSALQRLESFHLPPHLPGPPRAFRVGVPAFDLFPYETWARLAARFWRRPASALLGYGDPAGDAQLRELIASYLRSSRGLKCDPGQIVITCGAQQAI SLCTQLLLDPGDRVAMEDPGYRAAAHTFNVAGAQLEGIGVDSEGLDVAALERAGPCRLAYVTPSHQYPTGVTLSLPRRLALLDWAERNDAWIIEDDYDGE YRYSGTPLAPLAALDRGQRVLYVGTFSKIVFPALRLGYLVVPPRLAQAFARRRGVDMRHSDIGTQAVMAEFIAAGHFQRHIRRMRNAARARRDALLVGWP DEVPGCSALPEVHAGLHLSVRCESLARERELIAAAATVGVEINPLSVQWLPEGRTSADQRAGLVMGFAAVPERAIGEALQALLQAWKLPG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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