Pseudomonas sp. URMO17WK12:I3, H038_RS0115490
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I3 H038DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTGTTCGACAACCGTGACGGTCAGTTCACCCCTGGCCTGTATGCCCGCCTGAAGCTGGTCGGCAGCGACACCTACGACGCCATGCTGGTGCAGGACGTT GCGATCGGTACCGACCTGGGCAAGAAGTTCGTGCTGGTGCTCGGCGACAACAACACCGTGGCCTATCGCTCGGTGGAGCTGGGGCCGAAGCTCGAAGGCC TGCGCATCGTACGCAGCGGTCTGGCCAAGGGCGACCGGGTAGTGGTCAACGGCCTGCAGCACGCCCTGCCCGGCAGCACCGTGGACCCCGAAGCCGTGCC GATGGCCGACGAGAAAACCCTCGCCACCCTGGAAAAACAGCGCAAGGCGGTAGCCTCGGCGCGGAAAAATGACGAGCCGCTGAAGCTCAGCCTCAAGTAA CACCGGGCCTCGCCCTCTCCGACTGCCAACCCGAGAACCTGCTCGCGCCGCCTATGGCGTGGGCAGGCCGAGCCGTGCCCGTATCAAAAGGACATTAACG
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| DNA Sequence for Gene |
>H038_RS0115490
ATGAACTTCTCGCAGTTCTTCATCCAGCGGCCGATCTTCGCCGCCGTGCTGTCGCTGATCATCCTGATCGGCGGCGCCATCTCGCTGTTCCAGCTGCCGA TCAGCGAATACCCGGAAGTGGTGCCGCCCACCGTGGTGGTGCGTGCCGACTTCCCCGGCGCCAACCCCAAGGTGATCGGCGAAACCGTGGCTTCGCCGCT CGAACAGGCCATCGTCGGCGTCGAGGGCATGCTCTACATGTCCTCTCAGGCGACCAATGATGGCCGCATGACGCTGACCATTACCTTCGCCCTGGGTACC GATCTGGACACCGCTCAGGTGCAGGTGCAGAACCGTGTGACGCGCACCCAGCCGACCCTGCCGACCGAGGTGCAGCGTCTCGGCGTAACGGTCGACAAGG CCTCGTCGGACATGACCATGGTCGTGCACCTGACCTCGCCCAACGACGCCTATGACATGCTCTACCTGTCCAACTACGCCTCCTTGAACATCAAGGACGA GCTGTCGCGTCTCGATGGTGTGGGTGATGTGCAGTTGTTCGGCCTGGGCGACTACTCGATGCGCGTGTGGCTGGACCCGGACAAGGTCGCCTCCCGCGGG CTGACCGCCACCGATGTGGTCAACGCCATTCGCGAGCAGAACCGTCAGGTCGCGGCGGGCTCCCTCGGTGCGCCGCCAGCGGCCAGCGACAACAGCTTCC AGCTGTCGATCAACACCCAGGGCCGCCTGGTCAACGAGGAAGAGTTCGAGAACATCGTGGTGCGCGCCGGCGAGAACGGCGAAATCACCCGCCTCAAGGA CATCGCCCGCATCGAGCTGGGCTCCAAGCAATACGCCCTGCGTTCGCTGCTCAACAACAAGCCCGCCGTGGCTATGCCGATCTTCCAGCGCCCGGGCTCC AACGCCATCGCCATTTCCGATGCGGTGCGCGAGCGCATGGCCGAGCTGAAGCAGAGCTTCCCGGAAGGCGTGGACTACGAAATCGTCTACGACCCGACCA TCTTCGTGCGCGGCTCCATCGAAGCGGTGGTGCACACCCTGCTCGAAGCCATCGTGCTGGTGGTGCTGGTGGTGATCCTGTTCCTGCAGACCTGGCGCGC CTCGATCATTCCCCTGGCCGCCGTACCGGTGTCGCTGATCGGCACCTTCGCGGTCATGCACATGTTCGGCTTCTCGCTCAACGCGCTGTCGCTGTTCGGG CTGGTATTGGCCATCGGTATCGTGGTGGATGACGCCATCGTCGTGGTGGAGAACGTCGAACGCAACATCGGCCTGGGCAAGACGCCGCTGGAGGCGACCC GCCAGGCCATGAAGGAAGTCACCGGGCCGATCGTCGCCACCGCTCTGGTGCTCTGCGCCGTGTTCGTGCCGACCGCGTTCATCTCCGGCCTCACCGGGCA GTTCTATCAGCAGTTCGCGCTGACCATCGCCATCTCCACGGTGATCTCCGCCTTCAACTCGCTGACCCTGTCTCCGGCTTTGGCCGCCGTATTGCTCAAA GGTCATCATGAGCCCAAGGACCGCTTCTCGGTGGTGCTCGACCGTTTGTTCGGGCGCTGGCTGTTCAACCCCTTCAACCGCGTGTTCGAACGGGCCAGCC ATGGCTACGTCGGCACCGTGCGCCGTGTGGTACGCGGCAGCGGCATCGCCCTGATCGTCTACGTGGGCCTCATGGGGCTGACCTATATGGGCTTTTCCAG CACCCCGACCGGCTTCGTACCGCCCCAGGACAAACAGTACCTGGTGGCCTTCGCCCAGCTGCCGGACGCCGCCAGCCTGGATCGCAGCGAAGCGGTGATC AAGCATATGTCGGACATCGCCGCCAAGCACCCCGGCGTGGAAAACACCGTGTCGTTCCCGGGCCTGTCGATCAACGGCTTCACCAACAGCCCGAACAGCG GCATCGTGTTCGTCACCCTGAAGGACTTCGACCAGCGCAAGGACGCCTCGCTGAGCGCCAACGCGATTGCGGCTGACCTCAACGGCCAGTTCGCCAGCAT TCAGGAAGCCTACATCGCCATCTTCCCGCCACCCCCGGTGATGGGCCTGGGCACCATCGGCGGCTTCCGCGTGCAGCTGCAGGACCGTGGCGGCCTGGGT TACGAGGAGCTGTACAAGCAGACCCAGAACATCATCGCCAAGAGCCAGAACGTGCCGGAGCTGGCCGGGTTGTTCACCAGCTATCAGGTCAACGTGCCCC AGGTGGAAGCCAACCTCGACCGCGAGAAGGCCAAGACCCACGGCGTGGCCATCGATGACATCTTCGACACCATGCAGGTCTACCTCGGCTCGCTGTACGC CAACGACTTCAACCGTTTTGGCCGTACCTACCAGGTCAACGTGCAGGCCGACCAGCGCTTCCGCCTGGACGCCGAGCAGATCGGCCAGCTGAAGGTACGC AACAACCGTGGCGAGATGATCCCGCTGTCGACCTTCGTCAAGGTCAGCGACAGCTCCGGCCCCGACCGGGTGATGCACTACAACGGCTTCATCACTGCCG AGATCAACGGCGCCGCAGCTCCCGGCTACAGCTCCGGCCAGGCCGAAGCGGCGATGGCCAAGCTGCTCAAGGAAGAACTGCCCAACGGCATGAGCTACGA GTGGACCGAGCTGACCTATCAGCAAATCCTCGCCGGCAACACCGCGCTGTTCGTGTTCCCACTTTGCGTGCTGCTGGCCTTCCTGGTGCTGGCCGCCCAG TACGAGAGCTGGAGCCTGCCGCTGGCGGTGATCCTGATCGTGCCAACGGTGCTGCTGTCGGCCATTACCGGGGTGATCCTGTCCGGCGGCGACAACAACA TCTTCACCCAGATCGGCCTGATCGTATTGGTCGGCCTGGCGTGCAAGAACGCCATTCTGATCGTCGAGTTCGCCAAGGAGCAGCAGGAGCACGGCCTGGA TCGCGTCGCCGCGGTACTGGAAGCCTGCCGCCTGCGCTTGCGGCCGATCCTGATGACCAGCTTCGCCTTCATCATGGGCGTGGTGCCCCTGGTCATCTCC AGCGGCGCTGGTGCGGAAATGCGCCATGCCATGGGCGTTGCGGTGTTCAGCGGCATGCTCGGCGTGACCTTCTTCGGCCTGCTGCTCACCCCGGTGTTCT ATGTGCTGATTCGCGGCTTCGTGGAAAAGCGCCAGGCGCGTAAACAACAGGCCCGACTGCAGGAGGCCCAGGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATTCGATGACTCATTTGGTGCCACGCACCCTGCTGATCTCAGTCCTGGCGCTGGCCATCAGCGCCTGCGCCGTCGGCCCGGACTACAAGGCGCCGCAGGA GGCGCCCGCGGCCTCGCAACAGGCAGCTCAGGGCAACTACGACACCGCCCGCTTCGAAGCACAGTGGTGGCAGCAGTTCGATGATCCGACCCTCAACCAA CTGGTCGAGCAGTCACTGCAAAACAACCGCGAGTTGCGCGTGGCCTATGCCCGTCTGCGCGCCGCCCGGTCGATTCGCGATGACGTCGCCAACGACCGCC TGCCCACCGTAACCAGCCGGGCCAGCAGCGAGATCGGCAAGGCGCAGCAGCCTGGCGTGACCGAGCAGCGGGTCAACGCCGAGCGTTATGACCTGGGCCT GGACATGGCCTGGGAGCTCGATCTGTTCGGGCGCATTCAGCGGCAACTGGAAGCCAGCGAGGCGCAGATCGAAGTGGCCCAGGCCGACTACCAGCAGCTG
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| Amino Acid Sequence |
>transporter
MNFSQFFIQRPIFAAVLSLIILIGGAISLFQLPISEYPEVVPPTVVVRADFPGANPKVIGETVASPLEQAIVGVEGMLYMSSQATNDGRMTLTITFALGT DLDTAQVQVQNRVTRTQPTLPTEVQRLGVTVDKASSDMTMVVHLTSPNDAYDMLYLSNYASLNIKDELSRLDGVGDVQLFGLGDYSMRVWLDPDKVASRG LTATDVVNAIREQNRQVAAGSLGAPPAASDNSFQLSINTQGRLVNEEEFENIVVRAGENGEITRLKDIARIELGSKQYALRSLLNNKPAVAMPIFQRPGS NAIAISDAVRERMAELKQSFPEGVDYEIVYDPTIFVRGSIEAVVHTLLEAIVLVVLVVILFLQTWRASIIPLAAVPVSLIGTFAVMHMFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERNIGLGKTPLEATRQAMKEVTGPIVATALVLCAVFVPTAFISGLTGQFYQQFALTIAISTVISAFNSLTLSPALAAVLLK GHHEPKDRFSVVLDRLFGRWLFNPFNRVFERASHGYVGTVRRVVRGSGIALIVYVGLMGLTYMGFSSTPTGFVPPQDKQYLVAFAQLPDAASLDRSEAVI KHMSDIAAKHPGVENTVSFPGLSINGFTNSPNSGIVFVTLKDFDQRKDASLSANAIAADLNGQFASIQEAYIAIFPPPPVMGLGTIGGFRVQLQDRGGLG YEELYKQTQNIIAKSQNVPELAGLFTSYQVNVPQVEANLDREKAKTHGVAIDDIFDTMQVYLGSLYANDFNRFGRTYQVNVQADQRFRLDAEQIGQLKVR NNRGEMIPLSTFVKVSDSSGPDRVMHYNGFITAEINGAAAPGYSSGQAEAAMAKLLKEELPNGMSYEWTELTYQQILAGNTALFVFPLCVLLAFLVLAAQ YESWSLPLAVILIVPTVLLSAITGVILSGGDNNIFTQIGLIVLVGLACKNAILIVEFAKEQQEHGLDRVAAVLEACRLRLRPILMTSFAFIMGVVPLVIS SGAGAEMRHAMGVAVFSGMLGVTFFGLLLTPVFYVLIRGFVEKRQARKQQARLQEAQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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