Pseudomonas sp. URMO17WK12:I3, H038_RS0114025
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I3 H038DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCGACGTCGGCTTCCTTGGCGCCGCTCAGGTCGACAAGTTCGGCAACATCAACACCACGGTGATCGGCGACTACCACGCGCCGAAAGTGCGCCTGCCGG GCGCCGGTGGCGCGCCGGAAATCGCCGGCAGCGCCAAGAAAGTGCTGATCATCCTCAAGCAGGGGCACCGCACCTTCGTCGACAAGCTGGCCTTCATCAC CTCGGTCGGCCACGGCGAGGGCGGTGACCACCGCAAGCGTCTCGGCCTGCCGGGCGATGGCCCGGTGGCGATCATCACTGACCTGTGCATCATGGAGCCG GAAGCCGGCAGCAACGAATTCATCGTCACCTCGTTGCACCCGGGCGTGACCCGCGAGCAGGTGATCGAGAACACCGGCTGGCAGATCCGTTTCGCCGACC AGGTGGCCACCACTAAGGCACCGACTGCCGAGGAACTGGCCGCCCTGCGTGACTTGGAAGCCCGCACCGCAGAGGCCCATGGCCAGAAAGGAGGTGACGA
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| DNA Sequence for Gene |
>H038_RS0114025
ATGAGCCGCGAGGTTTTCATCTGCGACGCGGTGCGCACGCCGATTGGCCGCCTCAATGGTGCGCTGTCCGCGGTACGTGCCGACGACCTGGCGGCAATTC CGCTCAAGGCCTTGGTCGAGCGTAATCCGCAGGTCGACTGGTCCGCGGTCGACGAGGTATTCATGGGCTGCGCCAACCAGTCCGGCGAGGACAACCGCAA CGTGGCGCGGATGGCGCTGCTGCTCGCCGGCCTGCCGGAAACGGTGCCAGGTGTGACCCTCAATCGCCTGTGCGCCTCAGGCATGGAAGCGGTCGGTGCT GCGTTCCGCGCCATCGCCTCGGGCGAGATGGAGCTGGCCATCGCCGCAGGCGTCGAGTCGATGACCCGCGCGCCCTACGTGATGGGCAAGGCCGACAGCG CCTTTGGCCGCGGCCAGAAGCTGGAAGACACCACCCTGGGTTGGCGCTTCGTCAACCCGGCGATGAAAGAGCAGTACGGCGTCGATCCGATGCCGGTCAC CGGTGACAACGTCGCTGAGGACTATGGCGTCAGCCGCGCCGACCAAGACGCCTTCGGTCTGCGCAGCCAGCAGCGTGCAGCAGCGGCCCAGGAAGCGGGT TACTACGCCGAGGAGATCGTCCCGGTGGTGATCAAGACCAAGAAGGGCGAGATCGTCGTCGATACTGACGAGCACCCGCGTGCCGACACCACCGCCGAAG GCCTGGCCAAGCTCAAGCCGGTCAACGGCCCGGACAAAACCGTCACCGCCGGCAACGCCTCGGGCCTCAACGATGGCGCCTCGGCGATGATCCTGGCATC GGCCGAAGCCGTTGAACAGTACGGCCTCAAGCCCCGTGCCAAGGTGCTGGGCATGGCCAGCGGGGGCGTTGCCCCGCGCATCATGGGCGTCGGCCCGGTG CCGGCGGTACGCAAGCTGCTGACGCGTCTGAATCTGGATATCGATGCCTTCGACGTGATCGAGCTGAACGAAGCCTTCGCGGCCCAGGGCCTGGCAGTGA CCCGCGACCTCGGCCTGCCGGACGACAGTCCCAAGGTCAACCCGAACGGTGGCGCCATCGCCCTTGGTCATCCGTTGGGCATGAGCGGCAACCGCCTGGT GCTGACCGCGGTGCACCATCTGGAAAAGACCGGCGGCAAGCTCGGCTTGGCCACGATGTGCGTTGGCGTGGGGCAGGGGCTGGCACTGGCTATCGAGCGG GTTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGCCTGTTGCTAGCTGGCAGGAGCGGCCGATGAATATGTGGCTTTTGTAGGAGGGGCTTCAGCCCCGAGCTCTTTGTTTGCCTTGATAAAAAGCTCGCGG CTAAAGCGGATCGCCGCCCGGTCCCTCCTACCAGATCGCTGATTGTCTGCTTCTGCCTTCTAACAACCGCTTGACGTTTCGTTTGTCCTCACCAGGTCAC GGTCCACGACCCCGTGCCCCGGTGGGGATGAGCGACCTAAAATGACGAATCATTTGGTTACAGATGGGGTCGGAGTAGGGATCGTTCCGTTTCCTACCAG TGAGTATCCACAATGACTACTGATACCAGCACGGCGTACGAAGCCCCCAACTACAGCCCGCAAGAGCGGCGCAAGCGCATCTTCGCCATCGTTGGCGCGT CCTCGGGCAACCTGGTCGAATGGTTCGACTTCTACGTCTATGCCTTCTGCGCGATCTACTTCGCGCCGGCCTTCTTCCCCTCCGATGACCCCACCGTACA
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| Amino Acid Sequence |
>beta-ketoadipyl CoA thiolase
MSREVFICDAVRTPIGRLNGALSAVRADDLAAIPLKALVERNPQVDWSAVDEVFMGCANQSGEDNRNVARMALLLAGLPETVPGVTLNRLCASGMEAVGA AFRAIASGEMELAIAAGVESMTRAPYVMGKADSAFGRGQKLEDTTLGWRFVNPAMKEQYGVDPMPVTGDNVAEDYGVSRADQDAFGLRSQQRAAAAQEAG YYAEEIVPVVIKTKKGEIVVDTDEHPRADTTAEGLAKLKPVNGPDKTVTAGNASGLNDGASAMILASAEAVEQYGLKPRAKVLGMASGGVAPRIMGVGPV PAVRKLLTRLNLDIDAFDVIELNEAFAAQGLAVTRDLGLPDDSPKVNPNGGAIALGHPLGMSGNRLVLTAVHHLEKTGGKLGLATMCVGVGQGLALAIER V
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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