Pseudomonas sp. URMO17WK12:I3, H038_RS0113430 (fliN)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I3 H038DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGGCTCCGAGGTCAATCCGGCTCTGGCCAACATCGTCAGCCCCAGCGAAGTCATCGTGGTGTCGACCTTCCATATCGAGCTAGACGGTGGTGGCGGCGA CCTGCACGTGACCATGCCGTATTCGATGATCGAGCCAATCCGCGAAATGCTCGACGCCGGCTTCCAGTCCGACGTGGACGATCAGGACGAGCGCTGGGTC AAGGCCCTGCGTGAAGACATTCTCGATGTCAGCGTGCCGCTGAGCGCCACCGTTGCACGGCGCCAGCTCAAGGTGCGCGACATTCTGCATATGCAGCCCG GCGACGTGATTCCCGTGGAGCTGCCCGAGCACATGATTCTGCGCGCCAACGGTGTGCCGTCCTTCAAGGTCAAGCTCGGCTCGCACAAGGGCAACCTGTC GCTGCAGGTGCTCGATCCGGTTGATCGTCACCGCTAGCCCACTATTTTTCGCTGCGCCGCGTGCGCAGCCAAGCCGATAAACGCCAGCCGAGGTCCAACG
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| DNA Sequence for Gene |
>H038_RS0113430
|fliN
ATGGCAGACGAGAACGAACAAACCAGCCCCGAAGAACAAGCGCTCGCCGATGAGTGGGCGGCTGCGCTGTCCGAATCCGGTGACGCGGGCGGGCAGGACG ATATCGATGCGATGTTGGCCGCCAGTGCGGCCAGCCAGCCGTCGGCGCCGCGTGCGCCAATGGAAGAATTCGGCAGCATGCCCAAGACCAATAACCCGGT TAATCTGGAAGGCCCGAATCTCGATGTGATCCTCGATATTCCGGTGTCCATTTCCATGGAAGTGGGCAATGCCGACATCACCATTCGCAACCTGCTGCAG CTCAACCAGGGCTCGGTGATCGAGCTCGACCGCCTGGCCGGCGAGCCGCTCGACGTGCTGGTCAACGGCACCCTGATCGCCCATGGCGAAGTGGTGGTGG TCAACGAGAAGTTCGGCATTCGCCTGACCGACGTGATCAGCCCCAGCGAACGCATCAAGAAGCTGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCCATGAACAGACTCCTGCTCGCACTCCTTGCGCTGCCGTGCTTCGCCTTCGCCGCCGAGCCGGCTGCCCAGGCGCCTGCCGCCAGCGGCGGTATCGCC GGACAGCTGGCGCAGCTGGTGATTGGCCTGTTACTGGTGATCGGCTTGATCTTCCTGCTCGCCTGGATGATGCGCCGCGTGCAGCGTCTGGGCCCCAACA ATGGCAAGGTGATCAAGATCGTTGCCACTCAGGCGCTGAGCCCCCGCGATCGGCTGGTGCTGGTGCAGGTCGGCAACGAGCAGGTCTTGCTAGGCCTCAC ACCTGGGCGCATCAACTCGCTGCACGTGATGGGCGAGCCGGTTCACCTGCCCGATGCCGAGCCGGCATCCACCGAGTTCTCCCAGCGCCTCATGGAACTG CTGGGCAAGGACCAGAAGGACAAGTCCTGATGTTGCGACTTCTGCTTGTGCTGGTGTTCGCGCTAGGGGCTTCGCTGGCCTTCGCTCAGGAACCACCATC
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| Amino Acid Sequence |
>flagellar motor switch protein FliN
MADENEQTSPEEQALADEWAAALSESGDAGGQDDIDAMLAASAASQPSAPRAPMEEFGSMPKTNNPVNLEGPNLDVILDIPVSISMEVGNADITIRNLLQ LNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKLR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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