Pseudomonas sp. URMO17WK12:I3, H038_RS0110485
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I3 H038DRAFT_scaffold00008.8_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTTACCCCGGCATAACCCACAGATTTATCCACAAGCCGAAGGGCTTGCCTTGCTGCCCACACCGCACTATCTTGTATCCCCAGTTCGCCAGACCCCTATA TGTTGGGTTTCTGGTCTAAACGGACCCAAGCACAAATGTGCCGATGAAGTCCATGGCCCAAGCCCCTTTTTGCCAAGGCGGCGGCAACCCGGATACAGCG GCAGTGAATGAGCCGATCGTTCGCGCCATACGCAACACCAGAGGCTGTGCCCACACTACATCTAGTGGTCATGCACAGCAGGAAGCACCAGTTAACGCCA GGGATGAAGCGTTCCGGCAATCGAACAGTACCGACCGCCGCTGAGCCGCACGCCAGCCGGTCCATCACCGCCTTTTTGCAACACCCTGCCGCCCGCCTCG TGCAGGCGCAGGCTTTGTCGATTGGAATGAAAGCCAGGTACCACGTCGATCAGCGACGGAATGCTACAACCCGAAAATTTCATTGATCATGGAGACCTTC
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| DNA Sequence for Gene |
>H038_RS0110485
ATGCACACCGACACCACTCGTGAGAACCCTCAGGCCAATGTGCCTCAGGGCGACGCCCCTCAGGATCTGGCCGCTACCGCACCGGGCCAGCTGCGTGTGA TCAAGCGTAACGGCACTGTGGTGCCTTACACCGGTGACAAGATCACCGTGGCCATCACCAAGGCGTTCCTCGCAGTGGAAGGCGGCAACGCCGCCGCTTC GTCGCGCATCCATGACACCGTCGCGCGCCTGACCGAGCAGGTCACCGCGACCTTCAAGCGCCGTATGCCGTCCGGCGGCACCATCCACATCGAAGAGATC CAGGACCAGGTCGAACTGGCCCTGATGCGCGCCGGCGAGCAGAAAGTCGCCCGTGACTACGTGATCTACCGCGAAGCCCAGGCCAACAAGCGCAAGAGAG CCGACGCCGGCAGCGCCATTGCCGAGCCGCACCCGAGCATCCGCGTGACCCTCGCCGACGGCAGCCTCGAGCCGCTGGACATGGGCCGCCTGAACACCAT CATTTCCGAAGCCTGCGAAGGCCTGCTGGAAGTCGACGGCGAGCTGATCCAGCGTGAAACCCTGAAGAACCTGTACGACGGCGTGAACCAGAAGGACGTC AACACCGCCTTGGTAATGACTGCCCGTACCCTGGTCGAGCGCGAGCCGAACTACAGCTACGTCACCGCCCGCCTGCTGATGGACAACATCCGCGCCGAGG CCCTGGGCTTCCTGGGCATCGCCACCAGCGCCACTCACCACGAGATGGCCGAGCTGTACGCCAAGGCCCTGCCGGCCTACGTCGAAGCCGGTGCGAAGTT CGAGCTGCTCGACCCGAAACTGAAAGAGTACGACCTGGAGAAGCTGGGCAAGGCGCTGAACCACGAGCGCGACCAGCAGTTCACCTACCTGGGCCTGCAA ACCCTGTTCGACCGCTACTTCATCCACAAGGATGGCGTGCGCTTCGAGCTGCCCCAGGTGTTCTTCATGCGCGTGGCCATGGGCCTGGCCATCGAAGAGC CGAAGAACCGTGAAGAGCGCGCCATCGAGTTCTACAACCTGCTCTCCTCGTTCGACTACATGGCGTCGACCCCAACCCTGTTCAACGCCGGCACCCTGCG CCCGCAGCTGTCGTCGTGCTACCTGACCACCGTGCCGGACGACCTGTCGGGCATCTATGGCGCCATCCACGACAACGCCATGCTGAGCAAATTCGCCGGC GGCCTGGGCAACGACTGGACCCCGGTGCGCGCGCTGGGCTCCTACATCAAGGGCACCAACGGCAAATCCCAGGGCGTCGTGCCGTTCCTCAAAGTGGTCA ACGACACCGCCGTGGCGGTCAACCAGGGCGGCAAGCGCAAGGGCGCCGTGTGCGCCTACCTGGAAACCTGGCACATGGACATCGAGGAATTCCTTGAGCT GCGCAAGAACACCGGTGACGACCGTCGTCGCACCCACGACATGAACACCGCCAACTGGATTCCGGACCTGTTCATGAAGCGCGTCTTCGAAGACGGCAAG TGGACCCTGTTCAGCCCGAGCGAAGTACCGGACCTGCACGACCTGACCGGCAAGGCCTTCGAAGAGCGCTACGAGTACTACGAAGCCCTGATCGAGTACG GCAAGATCAAGCTGTACAAGACCATCCAGGCCAAGGACCTGTGGCGCAAGATGCTCTCGATGCTGTTCGAGACCGGCCACCCGTGGCTGACCTTCAAGGA CCCATGCAACCTGCGCAGCCCGCAGCAGCACGTGGGCGTGGTCCACAGCTCCAACCTGTGCACCGAGATCACCCTGAACACCAACAAGGACGAGATCGCG GTCTGCAACCTGGGCTCGATCAACATGGTCAACCACATCGTCGACGGCAAGCTGGACACCGCCAAGCTCGGTCGCACCGTGAAGACCGCCGTGCGCATGC TCGACAACGTCATCGACATCAACTACTACAGCGTGCCGCAGGCCCGTAACTCCAACCTCAAGCACCGTCCGGTCGGCCTCGGCCTGATGGGCTTCCAGGA TGCCCTGTACCTGCAGCACATCCCCTACGGCTCCGACGCCGCGGTGGAGTTCGCCGACCGCTCCATGGAAGCGATCAGCTACTACGCCATCCAGGCTTCC TGTGACCTGGCCGACGAGCGCGGCGCCTACGAAACCTTCGACGGTTCGCTGTGGAGCAAGGGCATCCTGCCGTTGGACTCCCAGCAGATCCTCATCGAAG CCCGTGGCGCCAAGTACATCGACGTCAACCTGGACGAAACCCTGGACTGGGCACCGGTGCGCGAGCGCGTCAAGAAAGGCGTGCGCAACTCCAACATCAT GGCCATCGCGCCGACCGCGACCATCTCCAACATCATTGGCGTGTCGCAGTCCATCGAGCCGACGTACCAGAACCTCTACGTGAAGTCGAACCTCTCCGGC GAATTCACCGTGATCAACCCCTACCTGGTTCGCGACCTCAAGAACCGCGGCCTGTGGGACCCGGTCATGGTCAACGACCTGAAGTACTACGACGGCTCCG TGCAGCAGATCGAGCGCATCCCGCAAGACCTGAAAGACCTGTACGCCACCGCCTTCGAAGTCGACACCAAGTGGATCGTCGATGCTGCCAGCCGTCGCCA GAAGTGGATCGACCAGGCGCAATCGCTCAACCTGTACATCGCTGGCGCTTCGGGCAAGAAGCTCGACGTGACCTACCGCATGGCCTGGTACCGTGGCCTG AAAACCACCTACTACCTCCGTGCCCTGGCCGCCACCAGCACCGAGAAGTCCACCATCAACACCGGCAAGCTCAACGCCGTGTCCAGCGGTGGCGACCAAG GCCTCAGCGCAGCCCCGGCTGCCGCGCCGGCCACCCAGGCCTCCCCTGGCCCGGCTCCGGTTCCGAAGGCTTGCGCCATCGACGAGCCGGACTGCGAAGC CTGCCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGCCTAGCCGGCTGCAGCCGGCACAGATAACCCAAGAGCCGGGGTACAGCCCCGGCCTCTGATAATCAGCCGTAGCGCTCTGCGTGCACCGCAAGCTAC CGACCGATTAGCCACTATCCACACAGGCCGGCCCTTAGCCGGCCTCTCGAGCAGGAGCCCCACCATGCTGAGCTGGGATGAATTCGACAAGGAAGACGGC GCCGAAGCCGCCTCCCCCGCCAAGAACACCGCTGCACAGGCCCAGGCCGGTGCCGACATGAGCCTGGAGAAACTCAACCAGGTCGGCGGCAATGCCGCCC TCGAAGCCCGCGCCGTCGACGCCAGCGACTCCGCTGCCGTGGCCCGCGCCAAACAGGCCCTCAACGACCTCGACATCCAGGAAGGCCTGGACGAGCTCGA AGGCAGCTCCGCGCGCGTGGAAGTCGGCGACAAGCAGATGATCAACGCCCGTGCCGACCTCAACCAGCTCGTACCCTTCAAGTACGACTGGGCCTGGCAG
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| Amino Acid Sequence |
>ribonucleotide-diphosphate reductase subunit alpha
MHTDTTRENPQANVPQGDAPQDLAATAPGQLRVIKRNGTVVPYTGDKITVAITKAFLAVEGGNAAASSRIHDTVARLTEQVTATFKRRMPSGGTIHIEEI QDQVELALMRAGEQKVARDYVIYREAQANKRKRADAGSAIAEPHPSIRVTLADGSLEPLDMGRLNTIISEACEGLLEVDGELIQRETLKNLYDGVNQKDV NTALVMTARTLVEREPNYSYVTARLLMDNIRAEALGFLGIATSATHHEMAELYAKALPAYVEAGAKFELLDPKLKEYDLEKLGKALNHERDQQFTYLGLQ TLFDRYFIHKDGVRFELPQVFFMRVAMGLAIEEPKNREERAIEFYNLLSSFDYMASTPTLFNAGTLRPQLSSCYLTTVPDDLSGIYGAIHDNAMLSKFAG GLGNDWTPVRALGSYIKGTNGKSQGVVPFLKVVNDTAVAVNQGGKRKGAVCAYLETWHMDIEEFLELRKNTGDDRRRTHDMNTANWIPDLFMKRVFEDGK WTLFSPSEVPDLHDLTGKAFEERYEYYEALIEYGKIKLYKTIQAKDLWRKMLSMLFETGHPWLTFKDPCNLRSPQQHVGVVHSSNLCTEITLNTNKDEIA VCNLGSINMVNHIVDGKLDTAKLGRTVKTAVRMLDNVIDINYYSVPQARNSNLKHRPVGLGLMGFQDALYLQHIPYGSDAAVEFADRSMEAISYYAIQAS CDLADERGAYETFDGSLWSKGILPLDSQQILIEARGAKYIDVNLDETLDWAPVRERVKKGVRNSNIMAIAPTATISNIIGVSQSIEPTYQNLYVKSNLSG EFTVINPYLVRDLKNRGLWDPVMVNDLKYYDGSVQQIERIPQDLKDLYATAFEVDTKWIVDAASRRQKWIDQAQSLNLYIAGASGKKLDVTYRMAWYRGL KTTYYLRALAATSTEKSTINTGKLNAVSSGGDQGLSAAPAAAPATQASPGPAPVPKACAIDEPDCEACQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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