Pseudomonas sp. URMO17WK12:I3, H038_RS0109975
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I3 H038DRAFT_scaffold00007.7_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTCGTCATGGCGGGCGCGAAACAGCGACAGGCGCGCCAGCAGCCAGCGCATGGTCAGGGTCGAGGGCGCCTTGAGGCGCAGGGTGCCGTCCTCCACGCG CAAGTGCGCGCAGGCCCGCTCCATGGACTCGAAGCCCTCGCGCACGCCTGGCAGCAACAGACTCGCCGGCTCGGTCAGGTGCAGTGCGCGGCCACGGCGC TCGAACAGCCGGCAGGCGAAGTGCTCTTCCAGGGTACGAATGTGCCGACTGACCGCACTCTGGGTGATCGCCAGCTCATCGGCAGCGCGGGTAAAGGACA GATGCCGCGCCGCGGCCTCGAAGGCGCGCAGGGCATATAAAGGCGGCAGGTGCCGGCTCACCGAACCTCTCCATGAGTTTTAATCATGCCATGCATCGCT ATTTTCCTTTTGTGGGCTCGGGCTGCAAACCGGAGAATAACTGGCATTGCCCTTCTCCCGACAGTGCGGGAGCAAATATCCAGCCGAAGTTTTACTCATC
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| DNA Sequence for Gene |
>H038_RS0109975
ATGAAAAGTCCCCTTGGTCACGAACTGGGCGCCCTGCTGCGCCTGGCCGGCCCGTTGATTTCTGCGCAGTTGGCCCATGCGCTGATGATCTTCACCGACA CGCTGATGATGGCCATGCTCGGCCCTGGGCAGCTGGCCGGCGGCGCTCTGGGTGCGACCTGCTATTTCATCTTCTCGATCTTCTGCACCGGGGTGATCGC CGCCGTGGGCAGCATGATCGCCATCCGCCACGGCGCCGGTGACCCGGAGGGCGTCACCCGCCTGCTGCGCAACGGCCTGTGGCTGGCCATCCTGCTGGGC ATCATCAGTGCGCTGTGCCTCAACGGCCTGGGGCCGCTGCTGCCGCACCTGGGGCAGGATCCGGCGGCGGCCAGCGAGGCCATGCACTTCCTGCGTCCGC TTTCGCTCGGCCTGCCCGCCTACCTGTGCTTCATGGCCCTGCGCGGCTTCACCAGCGCCATCGGCCATCCGGGCCCGGTGATGACCATCAGCATCGTCGG CACCATCGCCAACTTCATCATCAACTATGCGCTGATCAAGGGCTGGCTCGGCGTGGACCTGGGCCTGAGCGGAATCGGCCTGACCACCGCCCTGGTCAGC AGCGCCATGGCGCTGGCTCTGGGGCTGTACATCCTGATTGCGCCGACCTACCAGCGCTACAAGCTGCGCGGCGGCCTGGGTCGCCCGCAACGTGCCGAGC TGCGCGCCCTGCTGCGCCTCGGCCTGCCGATTGGCGGCACCTATGCGGCCGAGCAAGGGCTGTTCACCTTCGCCACCCTGTGCATGGGCGCCCTGGGCAG CGTACAGCTGGCGGCTCACCAGATCGCCATGCAATCGGTGGCCCTGGCCTTTATCGTGCCCCATGGTCTCTCGTATGCGGTGACCTTCCGGGTCGGCATG CACTACGGCGCAGGCCAGTTGCACCTTTCGCGCCTGGCCGGCCACCTGGGCATGGGGATGGGCGCCGCACTGATGCTGCTGTTCGCCCTGGCATTCTGGC TGCTACCGGAGTGGATCATCGGCCTGTTCCTTGATCGCCACGATCCGGCGTTCGCCAATATCGTCACCCTGGCTGTGAGTCTGCTGGCGATTGCCGCCTG GTTCGAGCTGTTCGACGGTCTGCAGAGCATCGCCATGGGTGCGATCCGCGGTCTCAACGACGGTCGCCTGACCCTGATGATCGGCCTGACCGGCTACTGG TGCATTGGCGCGCCGCTGGCCTGGCTGCTGGCCTTCCCGCTCGGCTGGGGCGCCCATGGCGTGTGGTGGGGCCTGGCTGCCGGCCTGGCGGTGACGGCGA GCGGGCTGGTGCTGGGTTTTCAGTGGAAAACCGCACGCCTGCAAAAGCCCAAGGCGATGCAGGCCTGCCTGGGTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGCAGTGCTTAGGAGCGGCCACCAAGCAGCGGCTCCCGCACACCAGCCGACAGAAAGTGCCCCAGCTCGGTCAACGGCATGGCCTTGCTGATCAGGTAG CCCTGTGCCTGATCGCAACCGAATTCGCGCAGCAACTGCAGCTGTTCCTCAGTCTCGACGCCTTCGGCGACCACCTGCAGATCCAGATTGTGGGCCAGGC TGATCATGGCCTGCACCAGTTGCTGGCTCTGCGGGCGCGTTTCCATGCCGGTGACGAAGCTGCGGTCGATCTTCAACAGGGCGATGGGCAGGTTGCTCAG GTGCTCGAAGGACGAGAAGCCAGTGCCGAAATCGTCCAGAGAGAACCGCACGCCCAGGTGGCCCAGGCGACGCATGGTCTGCAGCACGTAGTCGCTGCGG CGCATCACGGCGGTTTCGGTCAGCTCGAATTCCAGCCAGTGGCTGTCGATGCCGCAGCTGTCGATCAGCCGCTCGAGGGTCGGCAGCAACTGGCTGTCCT
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| Amino Acid Sequence |
>multidrug transporter
MKSPLGHELGALLRLAGPLISAQLAHALMIFTDTLMMAMLGPGQLAGGALGATCYFIFSIFCTGVIAAVGSMIAIRHGAGDPEGVTRLLRNGLWLAILLG IISALCLNGLGPLLPHLGQDPAAASEAMHFLRPLSLGLPAYLCFMALRGFTSAIGHPGPVMTISIVGTIANFIINYALIKGWLGVDLGLSGIGLTTALVS SAMALALGLYILIAPTYQRYKLRGGLGRPQRAELRALLRLGLPIGGTYAAEQGLFTFATLCMGALGSVQLAAHQIAMQSVALAFIVPHGLSYAVTFRVGM HYGAGQLHLSRLAGHLGMGMGAALMLLFALAFWLLPEWIIGLFLDRHDPAFANIVTLAVSLLAIAAWFELFDGLQSIAMGAIRGLNDGRLTLMIGLTGYW CIGAPLAWLLAFPLGWGAHGVWWGLAAGLAVTASGLVLGFQWKTARLQKPKAMQACLG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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