Pseudomonas sp. URMO17WK12:I3, H038_RS0108955
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I3 H038DRAFT_scaffold00007.7_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGGGGAACTGGCGCATCTTCAGGGCGTATTCGAACACCGCGCTGTCACCACCGATCTGCGGCGCTTCGGCGCTACCGCTGATCGGCAAAACTTCCAGGT ACAGATCCTGGGTCAGGCGCTGATTGAGGCGCAGCTCCTCCTCGCAGAAGTGCTTGCGTGCCTCGAGCGAGGTGAAGTCGAGAAAGCCGAAGTTGACCGG CTTCTTGATCTTGTAGGCGAAGGGACCGGTCAGCACGACCCAGGAAATATGGGTTTCGATGACACTGAAACCGCTCACCGGATGCGGATAAAGGGCCGGG TTCTGCAAGGCGGTAATCAGGGCTTGGCTCACGGGCGATCCTTGGCTTCATAAAGTGGGAACAGGCGCGCATTATGGGCCCTGGCTTGCGTGCTGCAAAC CGCTGGCGGTCGCTGCCGGCGCTTGCCAAAGTGCGTATAATGCCGCGCCATGACTCGTACCCGATCTTCCCGCTCCCGTTCCAAACGCCGCCCCCGTGGC
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| DNA Sequence for Gene |
>H038_RS0108955
ATGCGCCCCTTGCTGGGCTGGGCTGTAAAGCTCGGCCTGGTCGGCCTGGTGCTGTTCGCCGGTTTTGCGGTTTACCTCGATGCCATCGTCCAGGAGAAAT TCTCCGGCAAGCGCTGGACCGTTCCCGCCAAGGTTTACGCTCGGCCGCTGGAGCTGTTCGTCGGCCAGAAGCTGGCCAAGGATGACCTGCTCAAGGAAGT CGACGCCCTCGGCTATCGCCGTGAAAGCGCCGTAGATGGCCCTGGCGGCGTGGCCGTTTCCGGCAATAACGTGTCGCTTTATTCGCGCGGCTTCCAGTTC TACGAGAGCGCCGAGCCGGCCCAGCAGGTCAATGTGCGCTTCTCCGGTGACTATGTCGCCTCGCTGACCAAGTCCGACGGCAAGGACCTGGCCGTGGCGC GCCTGGAGCCGATGCTGATCGGCGGGCTGTACCCGGCGCATCAGGAAGACCGCGTGCTGATCAAGCTCGATCAGGTGCCGGCCTATCTGGTGGAAACCCT GGTGGCGGTCGAGGACCGCGATTTCTTCGAACACTTCGGCGTATCGCCCAAGGGCATCGCCCGGGCCATCTGGATCAACGCCTCGGCCGGCCAGCTGCGT CAGGGCGGCAGTACCCTGACCCAGCAGTTGGTAAAGAACTTCTACCTGACCAACGAACGCAGCCTGACCCGCAAGATCACCGAAGCGATGATGGCGGTGC TGCTGGAGTTGCACTACGACAAGCGCGAAATCCTCGAGGCCTACCTCAATGAGGTGTTCCTCGGCCAGGATGGCCAGCGCGCCGTGCATGGTTTCGGTCT GGCCAGCCAGTACTTCTTCAGCCAGCCGCTGTCCGAGCTCAAGCTCGATCAGGTGGCGCTGCTGGTCGGTATGGTCAAGGGCCCGACTTATTACAACCCG CGCCGTAACCCGGAGCGGGCGATGAATCGCCGCAACATGATTCTCGACCTGCTGGCCGAGCAGGGCGTGGTGTCGCCCGAAGAGGCGGCCGCCGCCAAAG CTCGTCCGCTGGGCGTGACCCAGCGCGGCAGCATGGCCAATGGCTCGTTCCCGGCGTTTCTGGATCTGGTCAAACGTCAGCTGCGCCAGGACTACCGCGA CGAAGACTTGACCGAGGAAGGTCTGCGCATCTTCACCAGCTTCGACCCGATTCTGCAGATCAAGGCCGAAGAGGCCCTGGCCGATACCTTCAAGCGTCAG GCCGGCCGCAAGGGGGCCGACGAGGTCGAAGCCGGCATGGTGGTGACCAATCCGGAAACCGGCGAGATCCAGGCGCTGATCGGCAGCCGTCAGGCACGCT TCGCCGGCTTCAACCGCGCGCTGGACGCCGTGCGCCCGATTGGTTCGCTGATCAAACCGGCCATCTACCTGACAGCCCTGGAGCGTCCGAGTCAGTACAC CTTGACCACTCGCGTGCAGGACGAACCCTTCTCGGTGAAGGGGCAGGACGGCCAGGTGTGGAAGCCGCAGAACTACGACCGCAAGGCCCACGGCAGCATT TACCTGTATCAGGGGCTGGCGCATTCCTACAACCTGTCCACCGCCAAACTCGGCCTGGAACTGGGCGTGCCGAATGTGCTCAAAACCCTCGAGCGCCTGG GTGTGTCGCGCCAATGGCCGGCTTATCCGTCGATGTTGCTGGGCGCTGGTGCGCTGACGCCGATGGAAGTCACCGGTATGTACCAGACCATCGCCAGTGG CGGCTTCAACACACCGCTGCGCGGTATCCGCAGCGTGCTGACCGCCGAGGGCGAACCGCTCAAGCGTTATCCGTATCAGATTCAACAGCGTTTCGACGCT GGCGCCATCTACCTGCTGCAGAACGCCATGCAGCGCACCATGCGCGAAGGCACCGGCCGCTCGGTCTACAGCCAGCTGCCGAGTTCGCTGACCCTGGCAG GCAAGACCGGCACCAGTAACGACTCGCGTGACAGCTGGTTCGCCGGCTTCAGCCAGGACCTGCTGGCCGTGGTGTGGATGGGCCGTGATGACAACGGTCC GACGCCGTTCACCGGCGCGACCGGTGCGCTGCAGGCCTGGACAGGCTTCATGCGTCGCGCCGATCCGCTGCCGCTGGACATGCCGTTGCCGGACAACGTG GTGATGGCCTGGGTGGATGCGGCGACGGGGCAGGGCTCGGCGCAGAATTGTCCGGGTGCCGTACAGATGCCGTATATTCGCGGCAGCGAGCCGGCACCGG GCACAGGTTGTGGTATTCAGGCGCCCGTCGACTCGGTGATGGACTGGGTGAAAGGCTGGTTGGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAGAGGTTTTGCCGTGAGCAAGTGGTTGATTCCCGTTTTGACCGCCTCGGTGGTTCTGGGTGGCTGTGCCAGCGTTCCGCGTGGTTCCATCCCGGTTGTG GATTCCGGTAGTTCGGCTTACGAGCAGGACGACCGCCCAGGCGGCGGTTACAACAACGCGCCGCAGCAACAGCAGCAGGCGCAGTCCATGCCCGAGGATT CGGGCGTGGTGGTGATGGTGCCGGGCGGCGGTGCATCTTCGTCGGCGCCGATCGACACCTACTCGGCACCGGCCGGCGCGCCGGCCAACAGCGGCGGCCT GACCTTCGACGAGCCGCCGCTGAGCAGCGAGCCGCTGGGTTCGCCCAATTACGGCAACTCGGCACCGTCCCAGCCATCGACGCCAAGCGGCATCCCCAGC GGTAACGCCGGTGGCGGTCTGGCCGCCGATGAGCAGCTCGATGGCCCGGTGCTGGCGCTGCTGACCAGCGCCCAGCAGCAGCAGACCGGTGGTGACTTCA
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| Amino Acid Sequence |
>penicillin-binding protein
MRPLLGWAVKLGLVGLVLFAGFAVYLDAIVQEKFSGKRWTVPAKVYARPLELFVGQKLAKDDLLKEVDALGYRRESAVDGPGGVAVSGNNVSLYSRGFQF YESAEPAQQVNVRFSGDYVASLTKSDGKDLAVARLEPMLIGGLYPAHQEDRVLIKLDQVPAYLVETLVAVEDRDFFEHFGVSPKGIARAIWINASAGQLR QGGSTLTQQLVKNFYLTNERSLTRKITEAMMAVLLELHYDKREILEAYLNEVFLGQDGQRAVHGFGLASQYFFSQPLSELKLDQVALLVGMVKGPTYYNP RRNPERAMNRRNMILDLLAEQGVVSPEEAAAAKARPLGVTQRGSMANGSFPAFLDLVKRQLRQDYRDEDLTEEGLRIFTSFDPILQIKAEEALADTFKRQ AGRKGADEVEAGMVVTNPETGEIQALIGSRQARFAGFNRALDAVRPIGSLIKPAIYLTALERPSQYTLTTRVQDEPFSVKGQDGQVWKPQNYDRKAHGSI YLYQGLAHSYNLSTAKLGLELGVPNVLKTLERLGVSRQWPAYPSMLLGAGALTPMEVTGMYQTIASGGFNTPLRGIRSVLTAEGEPLKRYPYQIQQRFDA GAIYLLQNAMQRTMREGTGRSVYSQLPSSLTLAGKTGTSNDSRDSWFAGFSQDLLAVVWMGRDDNGPTPFTGATGALQAWTGFMRRADPLPLDMPLPDNV VMAWVDAATGQGSAQNCPGAVQMPYIRGSEPAPGTGCGIQAPVDSVMDWVKGWLE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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