Pseudomonas sp. URMO17WK12:I3, H038_RS0107150
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I3 H038DRAFT_scaffold00006.6_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGACGACCATCACCGGCTTGCGGCCGAGTGCATCGGACAGCGGCCCGGTTATCAACAAGCCGACGGCCAGGGTGATGGTGGAAACGGAAAGGATCAGGCT GCTCTGCGCGGCGGTCAGATCGAACTGCTGCGCCAGCATCGGCATCATCGGCTGCACGCAATAAAGCAGGGCGAAGGTGGCGAAGCCGCCGCTGCACATG GCGAGAATGGTGCGCAGAAAGGCGCGGGTGCCCTTCTGGATATAAACGGGCTCCAGTGGAGCTCTGCTGGGAGCAGGTTCCTCATTCTGGGGGCTGACGC ATGCGTCGGATGTAACGGGCTGACTCATTGCTTCCTCGTGAATGTACTTTTCCCAGGCAAAACTCCGCCGTATGCGCTGGCACCGGCCAGCACGGGTGGT TGTTGTTATTGGGAATGGCATCAGGATAAGTAGGCGGGCAAGTTCTTTCCAATATAATATTCGACCCAATCGATACGTTTGACGACATGCCGGAGCAAGC
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| DNA Sequence for Gene |
>H038_RS0107150
ATGGAATTGCGCCATTTGCGCTACTTCGTGGCGGTGGCCGAAGAGCTGCACTTCGGCCGCGCCGCCGACCTGCTGGGTATTTCCCAGCCGCCGCTGAGCC AGCAGATCCAGGCGCTGGAGCAGGAACTCGGGGTGCGCCTGTTCGAGCGCAGCAATCGCCACGTAGCGCTTACCGATGCTGGGCGGCTGTTTCTCGAGGA GACGCGGCAGACCCTTGCTCAGGTCAGCAAATCGGTGGACGTGGTACGCCGCGCCCAGCAGGGCGAGATCGGCGAGCTGCAGATTGGCTTCACCGCCTCG GCGCCTTTCGTGTCGATCATTCCGCGGGCGGTGTTCGCCTTTCGCCAGGCGTTCCCTGCGGTGCACCTGGACCTGCAGGAGATGCCCAGCAGTCAGGTGT GCCAGGCGCTGATCGACAAGAAGCTGCAGATCGGCATGATCCGCCCGCTGGAGCTACCCGCCGAGCTGGATGCCGTGGAGCTGCTCAGGGAGCCGCTGGT GGCCCTGATGCACGCCGGGCATCCGCTGGCGGGCGAGCAGAACGGCGGGCTGGCGCTGGCCGAGCTGGCGGATGAGCCCTTCGTGTTCTTTCCGCGCAGT TACGGCACCGGCCTGCATGCCCAGCTGTTCGGCCTGGCCCGGCAAGCCGGCTTCACGCCGCGCATCACCCAGGAGGCCCACGAGGCGTTGACCATCATCG GTCTGGTGGCAGCGGGGCTTGGGGTGTCGGTGTTGCCGGCGTCGTTTCGGCGTATTCGTATCGACGGGGTGGTGTTTCGTACCCTGACCGACACGGGCGC CACCACTGCGGTGTGGCTGGTCAAACGCCGCCAGGAACGCTCGCCCCTGGCCCAGGCTTTTATCGACCTGCTGACCCGCGAGGTGCAGGCGCTCAAATAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGAGTGCCGACTCCCACGCCAGGCGCGGGAGTCGGGGGTCGGTCAACGCACCTTGAAGCGGTTCATCAGGCTGATCACCCGGCCATTGGCCTCCAGCAGG CTGCGGGTGTTGTCCTCGCTGGCGTGGCCGCTCTGCACCAGGTCATCGACCATGTGGCGTATCTGCACCATGCTGTGGTTGATCTCCTCGGTCACTGCGC TCTGCTGCTTGGCAGCGGTGGCGATCTGGGTGCTGAGGGTATTGATCTGGTTGACCGAGCTGGCCATCTCGTCGAGCCCCGCGTTGACTCGGGCCGTGGC GTCCGCTGCCGACTGGCAGCTGGCCTGGGTATTTTCCATGGCGGCCACCGAGGAGCTAACGCCGGTGGTCAGGCGGGCGAGCATCTCGTTGATCTGCGAG GTGCTGGCTTGGGTGCGCGCCGCCAGGGCCCGCACTTCGTCGGCCACCACCGCGAAGCCACGGCCCTGCTCGCCGGCCCGCGCCGCTTCGATGGCGGCGT
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| Amino Acid Sequence |
>LysR family transcriptional regulator
MELRHLRYFVAVAEELHFGRAADLLGISQPPLSQQIQALEQELGVRLFERSNRHVALTDAGRLFLEETRQTLAQVSKSVDVVRRAQQGEIGELQIGFTAS APFVSIIPRAVFAFRQAFPAVHLDLQEMPSSQVCQALIDKKLQIGMIRPLELPAELDAVELLREPLVALMHAGHPLAGEQNGGLALAELADEPFVFFPRS YGTGLHAQLFGLARQAGFTPRITQEAHEALTIIGLVAAGLGVSVLPASFRRIRIDGVVFRTLTDTGATTAVWLVKRRQERSPLAQAFIDLLTREVQALK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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