Pseudomonas sp. URMO17WK12:I3, H038_RS0106625
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I3 H038DRAFT_scaffold00005.5_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCCAGCCTCAAGGGCGAGTTCCGCATGGCGCAAACCATGATCCAGCCGGTGCAGAACAACCCGCTGAAATTCGCGCCCAACGTCGACGAAGCGCTGCTC ATGTTGCTGCGTCACGACAACCAGGCGTTCATGGCGCCGGATCAGGCAGTGGGCGAGAGTTTCGACGACCTGCGTGCCCACCAGCTGGCGCTGATGGCGG GCGTGCAGGCCGCCATCAAATATTTGCTCGCGCGCTTTGAACCGCGTGAGCTGGAAGGGCGTCTGAACAAGCCGAGCGGGCTCTCGGCACTGCTGCCCAA TGGCCGTCGGGCGCATTACTGGGAGCTGTTCACCGAGCTGTACGCGACCATCTCCCAGGAGGCCGAGGACGGTTTCCAGGAGCTGTTCGGCCGTGAATTC AGCCGCGCCTACGAAGAACACATTGCGAGATTGCGAGGCCGTTGAGGCCAAAGGGCCCGCCCTATCGAGGCGGGCCAGCGGTAACCATCGAGGAAGCGTT
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| DNA Sequence for Gene |
>H038_RS0106625
ATGCCAAGGATTCTGACACTGCTGGTCTTTCTGCTGCTCGGCGCCTGCGCGTCGGGGCCGAAGGAGCCGGTGCCCACCACCGTCGAGTTGCAGCTACAGG CCAGCCGCGACCTCAACCCGGCGCTCGACAGCGTAGCCTCGCCGGTCTGGGTGCAGATCTACCAGCTGCGCAATGCCTCGACCTTTTCCCGTGCCGATTT CTTCTCGCTGGTCGATCGCGCCGACGCCACCCTGGCTGGCGATCTGATCGAAACCGAGCGTTTCGTGGTGCGCCCCGGCGAAACCCAGCGCAAGTCACTG ACCCTCGACGACGCTACCCGCCACCTCGGCGTGGTGGTGGCCTACCGCGCCCTCGACCGTTCGATCTGGCGCCAGGTCATCGAAATTCCTGCCCATCAGG CCAGCGTCCTGCGCCTGCAGCTGGACGCCTATGCCATCAGCGCCGCGCCGCTGACCCCTCTTGAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTGGAGACCCGTTCATGTCCTGGAACAATCGTGTGGTTTGGTCGGAGGGAATGTTCCTGCGACCGCAGCACTTCCAGCAGCAGGATCGCTACATCGAAAC CCTGGTCGAAAGCCGCAATCATGCCGTGCAGCCCGGCGCCTGGGGCTTCTCCCAACTGCTGATCGACAGCGCCCTGCTGGCCCAGGGCAAGCTGGCCATC CTCTCGGCGCGTGGCCTGCTGCCGGACGGCACGCCGTTCAACATTCCCGAGAACGATGCCGCGCCGGCGCCGCTGAACATCGATGAAAACCTGCGCGACG GCGTCGTCTACCTGGCCCTGCCGCTGCGCCGTGCCGGCCTGCGCGACACCGTGGAGACTGGCGAGCCGCTCGGCTCGGCGCGCTACCTGAGCAGCGTGCA CGAAGTGCGTGACGACAATTCCTCGCTGGAAAGCCGCGCGCCGGTGGCCATCGGTTCCCTGGCGCTGCGCCTGATCACCGAGCGTGACGGCCTCGACGAG
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| Amino Acid Sequence |
>type VI secretion protein
MPRILTLLVFLLLGACASGPKEPVPTTVELQLQASRDLNPALDSVASPVWVQIYQLRNASTFSRADFFSLVDRADATLAGDLIETERFVVRPGETQRKSL TLDDATRHLGVVVAYRALDRSIWRQVIEIPAHQASVLRLQLDAYAISAAPLTPLE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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