Pseudomonas sp. URMO17WK12:I3, H038_RS0105845
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I3 H038DRAFT_scaffold00005.5_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCCGCCGAGTTTCTGCGCGTGCATTCACCCTCGGCCGAAGTGCAGGGCCACGGCAAACCGATTCTGCAGACCGGCAAGATGAACGTCGCCTTGGTTGGC ATCGAACCCGCCGGCAACTACGCCCTCAAGCTGACCTTCGACGACGGCCACGACAGTGGTCTGTTCAGCTGGGATTACCTCTACCAACTGGCCCTGCGCC AGGACGAACTCTGGCGTGACTATCTGGACGCCCTGGCCGCCGCCGGTCAGTCCCGCGACCCGAACGAGTCGGTCGTACGCCTGATGCTCTGACGCGGTTC AGATCGTCGATTCCACACCTCGCTCCCACCTGGCCGATCTTGCGCTAGCGTCTAAACTCGGGTAACCAGAGCACTTCAGGTTCACCCGCCATCCTCTGGA TGCCGCAAGCACCACTACCACTGCCAATCGCAAGCCTCGCCAGGATCGACGTCATGGCTAAAGCCAATGGCTGCCTGCGCGGGCAAAGGGAGCGTTGTCG
|
|
| DNA Sequence for Gene |
>H038_RS0105845
ATGAGTGAAAAGCAGAACGATGACCTGAAATACAAGCCCACCAAGAGCACCATGGGGATCAACCCGGTCATCGGTATACGCGGCAGGGATCTGCTGACTT CCGCCCGCCTGGTACTGACTCAGGCCATGCGCCAGCCGCTGCACAGCGCCCGGCATGCCGCCCACTTCGGCCTGGAGCTGAAGAACGTGCTGCTCGGCCA GTCCAAGCTGCAACCCGACGAAAACGACCGCCGCTTCAACGACCCGGCCTGGAGCCAGAACCCGCTCTACCGTCGCTACCTGCAAACCTATTTGGCCTGG CGCCAGGAACTGCACGACTGGGTCGAGCACAGCTCGCTGTCCGAGCAGGATGTCAGCCGCGGCCACTTCATCATCAACCTGCTGACCGAGGCGATGGCGC CGAGCAACAGCCTGGCCAACCCGGCAGCGGTCAAACGCATCTTTGACACCGGCGGCAAGAGCCTGCTCGATGGCCTTTCGCACATGGCCAAGGATCTGCT GAACAACGGTGGCATGCCCAGTCAGGTGGACATGAAGGCCTTCGAAGTGGGCCGCAACCTGGCCACCACCGAAGGCGCCGTGGTGTTTCGCAACGAGGTG CTGGAGCTGATCCAGTACACGCCGGTCACCGAGCAGGTCTACAAACGCCCGCTGCTGGTGGTGCCGCCACAGATCAACAAGTACTACGTATTCGACCTGT CGCCGGAAAAGAGCCTGGCGCGCTTTCTGTTGCGCAGCCAGGTGCAGACCTTTATCGTCAGTTGGCGCAACCCGACCAAGGCCCAGCGCGAATGGGGCCT GTCGACCTACATCGAAGCGCTCAAGGAAGCCGTCGAGGTAGTCTGCGCGATCACCGGCAGCAGCGATGTCAACGTGCTGGGCGCCTGCTCTGGCGGCGCC ACCACCGCATCGCTGCTCGGCCACTACGCAGCCATCGGCGAACAGAAGGTGCATGCCCAGACCCTGCTGGTCAGCGTGCTGGATACCCAGCTGGACAGCC AGTACGCGCTGTTCGCCGACGAGCAGACGCTGGAAGCCGCCAAGCGCCGCTCCTACCAGGCCGGGGTGCTGGAAGGCAGCGACATGGCCAAGGTGTTCGC CTGGATGCGCCCCAACGACCTGATCTGGAATTACTGGGTCAACAACTACCTGCTCGGCAACGAGCCGCCGGTATTCGACATCCTCTACTGGAACAACGAC ACCACCCGCCTACCCGCCGCCCTGCACGGCGAATTCATCGAGATGTTCCAGACAAACCCGCTGACCCGAGCCGGCGCGCTGGAAGTCTGCGGCACGCCCA TCGACCTCAAACAGGTCACCTGCGACTACTACGTGGTGGCCGGCAGCAACGACCACATCACGCCGTGGACGTCCTGCTACAAGTCGGCGCGGCTGTTCGG TGGGCAGTGCGAGTTCGTGCTGTCCAGCAGCGGGCATATCCAGAGCATCCTCAACCCGCCAGGCAATCCCAAGGCGCGCTACATGACCAACCCCGACATG CCGGCCGACCCCAAGGCCTGGCAGGAGGACGCCACCAAGCACGCCGACTCCTGGTGGCTGCACTGGCAGCAATGGCTGACCGCCCGCTCCGGAGAAACCA GAAAGGCGCCCGCCAAGCTGGGCAACAAGCGCTACCCGGCAGCCGAGGCGGCGCCGGGCACCTACGTGCACGAGCGCTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCGCGCGACGAACATCAACAGGGGCGCCACATGTCATCAGCCTTCGTGTTTCGCACCATCGTGCTGGATCAGCAGACGATCCGCACCGCCGTGCGCCCCG GCAGCCCGGACAAGGTGCCGCTGCTGATCTTCAACGGCATCGGCGCCAACCTCGAGCTGGTCATGCCCTTCGTCAACGCTTTGGACAAGGACCAGGAAAT CATCGCTTTCGATGTGCCGGGCGTGGGCGGCTCCTCCACCCCGAGCATTCCCTATCGTTTTCCTGGCCTGGCGAAGCTGGCGGCACGCATGCTCGACTAC CTGGACTACGGCCAGGTCAACGCCATCGGCGTGTCCTGGGGCGGCGCACTGGCCCAGCAGTTCGCCCGCGACTACCCGGAGCGCTGCAAGAAACTGGTGC TGGCTGCGACTTCGGCGGGTGCGGTGATGATTCCGGGCAAGCCCAAGGTGCTCTGGCGCATGGCCAGCCCGCGCCGCTATCTGCAGCCGTCCTACGGCGT
|
|
| Amino Acid Sequence |
>poly(R)-hydroxyalkanoic acid synthase
MSEKQNDDLKYKPTKSTMGINPVIGIRGRDLLTSARLVLTQAMRQPLHSARHAAHFGLELKNVLLGQSKLQPDENDRRFNDPAWSQNPLYRRYLQTYLAW RQELHDWVEHSSLSEQDVSRGHFIINLLTEAMAPSNSLANPAAVKRIFDTGGKSLLDGLSHMAKDLLNNGGMPSQVDMKAFEVGRNLATTEGAVVFRNEV LELIQYTPVTEQVYKRPLLVVPPQINKYYVFDLSPEKSLARFLLRSQVQTFIVSWRNPTKAQREWGLSTYIEALKEAVEVVCAITGSSDVNVLGACSGGA TTASLLGHYAAIGEQKVHAQTLLVSVLDTQLDSQYALFADEQTLEAAKRRSYQAGVLEGSDMAKVFAWMRPNDLIWNYWVNNYLLGNEPPVFDILYWNND TTRLPAALHGEFIEMFQTNPLTRAGALEVCGTPIDLKQVTCDYYVVAGSNDHITPWTSCYKSARLFGGQCEFVLSSSGHIQSILNPPGNPKARYMTNPDM PADPKAWQEDATKHADSWWLHWQQWLTARSGETRKAPAKLGNKRYPAAEAAPGTYVHER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|