Pseudomonas sp. URMO17WK12:I3, H038_RS0105065
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I3 H038DRAFT_scaffold00005.5_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGCTCTGGGTACTGCTCATCTATTTCGGCACCGTGGGGCTGATGCGTGGCCTGGCCGAACTGCTCGGCGTCGAGAGCCTCGAGCTGTCACCCTTCGCTG CCGGCGTCATCGCCCTGGGCCTGTGCTTCGGCGCCTACGCCACCGAAGTGTTTCGCGGCGCGATCCTGGCCATCCCCAAGGGCCACCGTGAAGCCGGCCA GGCCCTGGGCCTATCCAAGGGCCGCATTCTGTGGCGCGTGGTGATGCCGCAAATGTGGCGCATCGCCCTGCCCGGCCTGGGCAACCTGTTCATGATCCTG ATGAAGGACACCGCCCTGGTATCGGTCATCGGCCTCAACGAGCTGATGCGCCGGTCGCAGATCGCCGTGACCGCCAGCAAGGAGCCCTTCACCTTTTACA TGGTCGCCGCATTCATCTACCTGGGCCTGACCATCATCGCCATGATTGGCCTGCACTTCCTCGAGAAGCGTGCCAGCCGCGGCTTCAAGCGGAGTGAGGC
|
|
| DNA Sequence for Gene |
>H038_RS0105065
ATGAACTGGGACGTCATCATCACCTGGCTGCCGCGCCTGGCCCAAGGCGCTCTGCTGACCATCGAGCTGGTCGCCGTGGCGGTCGTCACCGGCCTGATCC TGGCCATCCCCATGGGCATCGCCCGCGCCTCGCGCCACTGGTACGTGCGCGCCATGCCCTATGGCTACATCTTCTTCTTCCGCGGCACGCCGCTGCTGGT GCAGCTGTTCCTGGTCTACTACGGCCTGGCGCAGTTCGACGCCGTGCGCCAGGGCCCGCTGTGGCCGTACCTGCGCGACCCTTACTGGTGCGCGGTGATC ACCATGACCCTGCACACCACCGCCTATATCGCCGAGATTCTGCGTGGTGCCATCCAGTCCGTACCGCCGGGCGAGATCGAAGCGGCGCGGGCGCTGGGCA TGTCGCGGGCGCAGGCCATGCTGCACATCGTGCTGCCACGGGCCGCGCGCATCGGCCTGCCGGCCTACAGCAACGAAGTGATCCTGATGCTCAAGGCCAG CGCCCTGGCCAGCACCGTGACCCTGCTGGAACTGACCGGCATGGCGCGCACCATGAACGCGCGCACCTACCTGCCGGTCGAGGGTTTCTTCGCTGCCGGG GTGTTCTACCTGCTGATCACCTTCGTGCTGATCAACGCCTTCAAACTACTGGAACGCTGGCTGCGCGTCGACGCCTGCCAGGGCCGTTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GAATAAGACGGGGCGCAAGCCCCGTCGCTGTTTCTCATGACCTCAGCCGACTCTCTTCCGCCGCTCAGCGGCGACGCCCTGCTCCAGCGCTTCCACGCGC TGGACGCCTTTCTCGTCGCCCATCAGGCGCTGTGGAAACCCCGGCCATTCACCCACCGGACTCTGCCCTGGGAAAACCAGCATGCCGAACTGGCCGCCTG GCTGCGCAGCCGCACCCTGGAGCAGGCCGAGGCTAGCCACAACCAGCCGACGGCACTGAGCGATGCACCGGCGCCCTTCCCCGAACTGGCTCTGCAGGCC GAGCGCCTGAGCCAAGTCAGCAACCTGCCTCAGCAAGCGTCGGCCGACCTGCCACCGCGCTTCTCGGTGGACGTTCCCGGTCGCAAATGGCAGCAGATAC GCGCGTTCGGCGACAGCCTGAGCTTCGCCCGACCACCACAGCACTGGCTGGACTGGTGCGCCGGCAAGGGCCACCTCGGCCGCGTACTCGCCCACGGCGG
|
|
| Amino Acid Sequence |
>ABC transporter permease
MNWDVIITWLPRLAQGALLTIELVAVAVVTGLILAIPMGIARASRHWYVRAMPYGYIFFFRGTPLLVQLFLVYYGLAQFDAVRQGPLWPYLRDPYWCAVI TMTLHTTAYIAEILRGAIQSVPPGEIEAARALGMSRAQAMLHIVLPRAARIGLPAYSNEVILMLKASALASTVTLLELTGMARTMNARTYLPVEGFFAAG VFYLLITFVLINAFKLLERWLRVDACQGR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|