Pseudomonas sp. URMO17WK12:I3, H038_RS0104355
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0019867 | outer membrane |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01414
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF103515 | Autotransporter | IPR036709 | Autotransporter beta-domain superfamily | 268 | 570 | 1.83E-53 |
| Pfam | PF03797 | Autotransporter beta-domain | IPR005546 | Autotransporter beta-domain | 306 | 550 | 2.6E-56 |
| NCBIfam | TIGR01414 | JCVI: outer membrane autotransporter barrel domain | IPR006315 | Outer membrane autotransporter barrel domain | 250 | 570 | 4.5E-33 |
| SMART | SM00869 | Autotransporter_2 | IPR005546 | Autotransporter beta-domain | 303 | 560 | 8.8E-45 |
| Gene3D | G3DSA:2.40.128.130 | - | IPR036709 | Autotransporter beta-domain superfamily | 275 | 570 | 3.4E-60 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.