Pseudomonas sp. URMO17WK12:I3, H038_RS0103095
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URMO17WK12:I3 H038DRAFT_scaffold00004.4_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAAGACGCCATCCCATGCCCGCGCCGAAACCCTGAGCGAGCAGCCGATGTTCCGTGAGGCCTTTCGCCTGCGCCGCGGCCTGATTCCCGCCAACGGTTT CTATGAATGGCGCGGCGCGGCGCGCAAGCGCCCGTACTGGCTGAGCGGCGAGGATTCGCTGCTGTATTTTGCGGCAGTGTGGGAAGCCTATCCGGTAGAG GGCCATGTTTATCTGAGCACCGCCATGGTCACCCAGGCGGCCGCGACGCTGCGCCGCCCCTTGATTCTCGATGCCGAGCAACGGCAACGCTGGCTGGCCG CCGACACACCGCTGGAGGAGCTGCAGGCGCTGCTCGTCGCCAAGCCGATGGTGTTGCGCGAACGCGTGTTGAGCAATCTGGTCAATGACCCGAAGCTCGA CGGGCCGGAGTGTCTGACGCCTGCCTGAGTCTTTGGCTTGCGCTGAAATACGGGCAGCCTGTTAGCATACTTCGTCTCAGTTACCAGGGAGAGATCCAGC
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| DNA Sequence for Gene |
>H038_RS0103095
ATGAAACCGTCGTTGTCCATTACCACGCTGACTGCGGCTCTGCTGCTGGCAGGATGCCAAGCCGTCAACACCACCAGCGGTGGCTCGGTCGGCGTCGAGC GCAAGCAGTACATGTTCAGCGCGCTGTCGACCGATGAGGTCAACCAGATGTATGCCCAGTCCTACCAGCAGACGTTGAAGGAAGCTTCCAGCCAGGGCGC GCTGGACAAGAACAGCGCCGAGGCCAAGCGCCTGCAGCGTGTCGCCGACCGCCTGATCAAGCAGGCACCGCTGTTCCGCCCGGATGCGGCGCAGTGGCAG TGGGAGGTCAACCTGATCAAGAGCCCTGAGTTGAACGCCAACTGCGGCCCGGGTGGCAAGATCATTTTCTACACCGGCATCATCGACAAGCTGAACCTTA CCGATGACGAAATCGCTGCGGTCATGGGCCACGAGATCGCCCACGCTCTGCGCGAGCATGGCCGCGAAGCGATGTCCAAGGCATATGGAGTGAACCTGGC GAAGCAGGGCGCAGCCGCGTTGTTGGGTGTCAGCTCGGACCAGATGGCACTCGCCGATGCTGCAGTGAACTACGGTATGACACTGCCCAACAGCCGCAGC AACGAGAACGAAGCCGACCTGATCGGTCTCGAACTCGCCGCGCGCGCAGGCTACAACCCCAATGCGGCGGTCAGCCTGTGGCAAAAGATGGCCAAGGCCA GTGAAGGTGCGCCGCCGGAATTCATGAGTACGCACCCGTCCTCGTCCAGCCGTATCGCCTCGCTGCAGGCGGCCATTCCGAAAGTCATGCCGCTGTATCA GCAGGCCAAGAAAGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTACTATGTGAAAAGCCGTCACCAAGCAGCTCGTGTCTGCTTGGTGACGGCTCAGCTTCAAGGCCAGCGCCCTGGTCCGGCGTTGGCTTTGTCTCCAGGC GCTCAGCCGTTGAGAAAGCCACTCAGCAGCATGGCCTGATACGCCGCATAGATCGCCAGGATTGCGAAGGCGAGGGCGGCAAGCCGGCGAATCAGGGTGA GCGGCAGGCGGTCGGCCGCGAAGTTGCCGGCCAGCACCACCGGTACGTTGGCGATCAGCATGCCCAGCGTGGTACCGAGCACCACCATGATGAAGTGCGG GTACTGAGCGGCGAGCATTACCGTCGCCACCTGGGTCTTGTCACCCATCTCCGCCAGGAAGAAGGCCACCAGGGTAGTCAGAAACGGCCCGTAGCGTTTC AGGTTGGAGCTCTCGTCGTCATCGAGTTTGTCCGGGATCAGCGTCCAAAGGGCTACGGCGATGAACGACGCCGCCAGAATCCAGCTCAGCAGCGCGGGCG
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| Amino Acid Sequence |
>peptidase M48
MKPSLSITTLTAALLLAGCQAVNTTSGGSVGVERKQYMFSALSTDEVNQMYAQSYQQTLKEASSQGALDKNSAEAKRLQRVADRLIKQAPLFRPDAAQWQ WEVNLIKSPELNANCGPGGKIIFYTGIIDKLNLTDDEIAAVMGHEIAHALREHGREAMSKAYGVNLAKQGAAALLGVSSDQMALADAAVNYGMTLPNSRS NENEADLIGLELAARAGYNPNAAVSLWQKMAKASEGAPPEFMSTHPSSSSRIASLQAAIPKVMPLYQQAKKG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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