Pseudomonas sp. URIL14HWK12:I7, H032_RS0129685 (hscA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I7 H032DRAFT_scaffold00012.12, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCGTTATCTGGAATTGGCCCGTGGTGTCCACCCGGACCGCTTTGCTGACGCCTCCGAAGCCGAGCAGCGCCGGGCGCTTGAGCAGTCTGCGAGCCTCA ACGAGGCGTACCAGACACTCAAGAGTCCAGCCAAGCGCGCGCGTTACCTGCTCGCCATCAGCGGCCATGAGTTGCCGCTGGAGGTCACGGTCCACGATCC CGAGTTTCTTTTGCAGCAGATGCAATGGCGCGAAGAGCTCGAAGACCTGCAGGACAGCGCCGACCTGGCCGGTGTCGCGGTATTCAAGCGCCGCTTGAAA GACGCCCAGCACACATTGAACGAAAGCTTCGCAGCCTGCTGGAACGATGCCGCGCAGCGCGAACAGGCCGAACGCCTGATGCGGCGCATGCAGTTCCTCG ACAAGCTCACCTACGAAGTGCGCCAGCTCGAAGAGCGCCTCGACGATTAACCCAGTGCCGCTCCGGTCGCACGCCTGATTACAGATAAGTCCTGATTACG
|
|
| DNA Sequence for Gene |
>H032_RS0129685
|hscA
ATGGCCCTACTGCAGATCGCCGAACCCGGCCAAAGTCCACAACCGCACCAGCGTCGCCTGGCTGTCGGGATTGACTTGGGTACCACCAATTCCCTGGTCG CTGCCTTGCGCAGCGGTCTTTCCGAACCGCTGGCCGATGAGCAAGGGCAAGTGATCCTGCCGTCCGCCGTGCGCTATCACGCCGATCACGTCGAAGTGGG CGAGTCGGCCAAGCTGGCCGCCGCCACCGACCCGTTGAACACCATCGTCTCGGTCAAGCGCTTGATGGGTCGTGGTCTGTCCGACGTCAAGCAACTGGGC GACCAACTGCCGTACCGCTTCGTCGGCGGTGAATCCCACATGCCGTTCATCGAAACCGTACAGGGCCCGAAAAGCCCGGTAGAGGTTTCCGCCGACATCC TCAAGGTCCTGCGCCAGCGCGCCGAAGCGGCACTGGGCGGTGAATTGGTGGGCGCGGTCATTACCGTCCCGGCTTATTTCGACGATGCCCAGCGCCAAGC CACCAAGGATGCCGCCAAGCTTGCCGGCCTGAACGTGCTGCGCCTGCTCAACGAGCCGACGGCCGCTGCGGTGGCGTATGGCCTGGACCAGCATGCCGAA GGCCTGGTCGCCATCTACGACTTGGGTGGCGGTACTTTCGATATTTCGATCCTGCGCCTGACTGGCGGTGTCTTCGAAGTCCTGGCCACCGGCGGCGACA GCGCCCTGGGCGGCGATGACTTCGACCACGCCATCGCCGGCTGGATCATCGAGCAAGCCGGTTTGTCCGCTGACCTCGACCCGGGTGCGCAACGCCATCT GCTGCAAACCGCCTGCGCCGCCAAGGAAGCCTTGACCGACGCCGCCACGGTTGAAGTCGCTTATGGCGACTGGAAAGCCGCGCTGACCCGCGAAGCCTTC GATGCCCTGATCGAACCCATGGTCGCCCGCAGCCTCAAGGCCTGCCGCCGTGCCGTGCGCGATTCCGGCGTAGAGCTCGAAGACGTCAAGGCCGTGGTCA TGGTCGGTGGTTCGACCCGCGTACCTCGGGTTCGCGAAGCCGTGGCCGAGGCCTTTGGCCGCCAGCCGCTGACTGAAATCGACCCGGACCAGGTGGTTGC CATCGGCGCCGCGATCCAGGCCGATACCCTGGCCGGCAACAAGCGCGATGGCGGCGAACTGCTGCTGCTCGACGTGATTCCGTTGTCCCTGGGCCTGGAG ACCATGGGCGGCCTGATGGAGAAGGTGATTCCGCGTAACACCACCATCCCCGTTGCCCGCGCCCAGGACTTCACCACCTATAAAGACGGCCAGTCGGCCA TGATGGTCCACGTGCTGCAAGGCGAGCGTGAGCTGATCAGCGACTGCCGCTCCCTGGCTCGCTTCGAATTGCGCGGCATCCCGCCGATGGTGGCGGGTGC GGCGAAGATCCGCGTGACCTTCCAGGTCGATGCCGACGGCTTGCTCAATGTCTCCGCCCGCGAACTGGGTTCGGGCGTGGAGGCGAGCATCCAGGTCAAG CCGTCCTATGGCCTGACCGACGGCGAAATCGCCAAGATGCTCAAGGATTCCTTCCAGCATGCCAGCGACGACAAAGTCGCCCGTGTGCTGCGCGAGCAGC AGGTCGACGCCCAGCGCCTGATCGAAGCCGTGCAAGGTGCCCTTGAGGCTGACGGCGACCGTTTGTTGGATGCCGAAGAGCGCATGGTCATCGAGCTGCA GATGCAGGAATTGTCCGAATTGATCAAAGGCACCGATGGCTATGCCATCGAGCAGCAGACCAAGCGTCTGTCGCACGTCACCGACGCCTTTGCTGCCCGC CGCCTGGACTCGACGGTGAAAGCCGCCCTGGCGGGGCGCAACCTGAATGAAATCGAGGAATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CTGATGCCGCAGATCATTTTTCTGCCACACGCCGAGCATTGCCCGGACGGTATGGTGGTAGAGGCCGAAACCGGCAAGTCCATTCTTGAAGTGGCCCACG ACAACCACATCGAGATCGAGAGCGCCTGCGGCGGTGTCTGTGCCTGCACCACGTGCCATTGCATCATTCGCGAAGGTTTCGACTCGTTGAATGAGGCCGA TGAGCTGGAAGAAGACTACCTTGATAGGGCCTGGGGCCTGGAACCGACGTCGCGCCTGACCTGTCAGGCCAAGGTCGGCACCGAGGACCTAGTGGTCGAA ATCCCGAAATATTCGCTTAACCATGCGGCCGAAGCGCCGCACTGATGGTGACACTGTCATGAGCTATGGTTGGAATGATGTACAACGCATCGCAGAAGAA CTGGCCGAAGCCAAGCCGGACGTGGATCCGCTGAAGGTCAATTTCGTCGATCTGCAGCACTGGATCATGGAGCTTCCCGGTTTCGACAGCACCTCTGGCC
|
|
| Amino Acid Sequence |
>chaperone protein HscA
MALLQIAEPGQSPQPHQRRLAVGIDLGTTNSLVAALRSGLSEPLADEQGQVILPSAVRYHADHVEVGESAKLAAATDPLNTIVSVKRLMGRGLSDVKQLG DQLPYRFVGGESHMPFIETVQGPKSPVEVSADILKVLRQRAEAALGGELVGAVITVPAYFDDAQRQATKDAAKLAGLNVLRLLNEPTAAAVAYGLDQHAE GLVAIYDLGGGTFDISILRLTGGVFEVLATGGDSALGGDDFDHAIAGWIIEQAGLSADLDPGAQRHLLQTACAAKEALTDAATVEVAYGDWKAALTREAF DALIEPMVARSLKACRRAVRDSGVELEDVKAVVMVGGSTRVPRVREAVAEAFGRQPLTEIDPDQVVAIGAAIQADTLAGNKRDGGELLLLDVIPLSLGLE TMGGLMEKVIPRNTTIPVARAQDFTTYKDGQSAMMVHVLQGERELISDCRSLARFELRGIPPMVAGAAKIRVTFQVDADGLLNVSARELGSGVEASIQVK PSYGLTDGEIAKMLKDSFQHASDDKVARVLREQQVDAQRLIEAVQGALEADGDRLLDAEERMVIELQMQELSELIKGTDGYAIEQQTKRLSHVTDAFAAR RLDSTVKAALAGRNLNEIEE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|