Pseudomonas sp. URIL14HWK12:I7, H032_RS0128700 (ligD)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003910	DNA ligase (ATP) activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01068	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006310	DNA recombination	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01068	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006281	DNA repair	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01068	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF01068	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
CDD	cd07971	OBF_DNA_ligase_LigD	-	-	419	536	5.01183E-50
CDD	cd07906	Adenylation_DNA_ligase_LigD_LigC	-	-	234	417	2.58032E-83
NCBIfam	TIGR02776	JCVI: DNA ligase D	IPR014143	DNA ligase D	246	850	0.0
CDD	cd04862	PaeLigD_Pol_like	IPR033651	LigD polymerase domain, PaeLigD-type	596	820	4.32965E-119
Gene3D	G3DSA:3.90.920.10	DNA primase, PRIM domain	-	-	586	867	1.6E-91
Pfam	PF04679	ATP dependent DNA ligase C terminal region	IPR012309	DNA ligase, ATP-dependent, C-terminal	435	531	1.4E-23
NCBIfam	TIGR02779	JCVI: non-homologous end-joining DNA ligase, ligase domain	IPR014146	DNA ligase D, ligase domain	236	537	1.1E-106
Pfam	PF13298	DNA polymerase Ligase (LigD)	IPR014144	DNA ligase D, 3'-phosphoesterase domain	41	144	1.6E-39
SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	IPR012340	Nucleic acid-binding, OB-fold	419	538	1.8E-28
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	205	224	-
Pfam	PF01068	ATP dependent DNA ligase domain	IPR012310	DNA ligase, ATP-dependent, central	237	416	2.3E-25
Gene3D	G3DSA:3.30.1490.70	-	-	-	245	414	7.9E-45
NCBIfam	TIGR02778	JCVI: non-homologous end-joining DNA ligase, polymerase domain	IPR014145	DNA ligase D, polymerase domain	579	821	9.5E-88
Gene3D	G3DSA:3.30.470.30	DNA ligase/mRNA capping enzyme	-	-	258	373	7.9E-45
SUPERFAMILY	SSF56091	DNA ligase/mRNA capping enzyme, catalytic domain	-	-	221	417	3.36E-45
NCBIfam	TIGR02777	JCVI: DNA ligase D, 3'-phosphoesterase domain	IPR014144	DNA ligase D, 3'-phosphoesterase domain	6	164	2.0E-72
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	548	574	-
Gene3D	G3DSA:2.40.50.140	-	IPR012340	Nucleic acid-binding, OB-fold	418	539	1.3E-36
PANTHER	PTHR42705	BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD	-	-	236	863	8.8E-105
MobiDBLite	mobidb-lite	consensus disorder prediction	-	-	1	28	-

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.