Pseudomonas sp. URIL14HWK12:I7, H032_RS0126520
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I7 H032DRAFT_scaffold00004.4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCACCGATTGCACCGACGAGATGACCATTGTGCGTGAAGAAATCTTCGGCCCGGTGATGAGCATCCTCACCTATGACACCGAAGAAGAAGTGATCCGCCG CGCCAACGACACCGACTTCGGCCTGGCCGCTGGCGTCGTCACTCGCGACCTGAACCGCGCCCACCGTGTGATCCACCAGCTCGAAGCCGGTATCTGCTGG ATCAACGCCTGGGGTGAGTCGGCGGCTGAAATGCCGGTCGGTGGCTACAAGCAATCGGGCGTGGGCCGGGAGAACGGCATCAGCTCGCTGAACAACTTCA CACGCATCAAATCGGTACAGGTCGAGTTGGGCGATTACACGTCGGTGTTCTGATCTGGCATTGCTTCGCCGGCCAGGCCGCCATCGCGAGCAAGCTCGCT CCCACATTGGGATGAAATCTCCTGTGGGAGCGAGCTTGCTCGCGATCGAGTGCAAAGCACTCGCCAACCCTGAACCCAATTCCAGAAGAGGGTGCATTTC
|
|
| DNA Sequence for Gene |
>H032_RS0126520
ATGTCCCAAACATTCGATTACATCATCATCGGTGCCGGTTCGGCCGGTAACACCCTGGCTACCCGCCTGACCGAAGACGAAGGCGTCACCGTCCTGCTGC TCGAAGCCGGCGGTCCGGACTATCGCTTGGACTTCCGCACGCAAATGCCCGCCGCCCTGGCGTTCCCGCTGCAAGGCCGGCGCTACAACTGGGCCTACGA GACCGACCCGGAGCCACACATGGATGGCCGCCGCATGGAATGCGGTCGCGGCAAGGGCCTGGGCGGTTCTTCGCTGATCAACGGCATGTGCTACATCCGC GGCAACGCCCTGGACTATGACAACTGGGCCAAGCTGCCGGGCCTGGAAGACTGGACCTACCTCGATTGCCTGCCGTATTTCCGTAAAGCCGAAACCCGCG ACATCGGCCCGAACGACTACCACGGAGGCGACGGCCCGGTCAGCGTGACCACACCCAAGGCCGGCAACAACCCGCTGTTCCACGCCATGGTCGAAGCCGG CGTACAGGCCGGTTACCCGCGTACCGAAGACCTCAATGGCTACCAGCAGGAAGGTTTCGGCCCGATGGACCGTACCGTCACGCCCAATGGCCGCCGGGCC AGTACCGCACGCGGTTACCTGGACATCGCCAAGAAGCGCTCGACCCTGACCATCGTCACTCACGCCCTGACCGACAAGATCATCTTCGAAGGCAAACGCG CGGTCGGCGTGCGTTACCTGGTGGGCGCCGCCGAAGAGCGCGTCGAAGCCCGGGCGCGCAAGGAAGTGCTGCTGTGCTCCGGCGCCATCGCCTCGCCGCA GATCCTCCAGCGTTCCGGTGTCGGCCCAGCCAAGCTGCTGGAAAGCCTCGACATCCCGGTGGTTCACGATCTGCCAGGCGTCGGTGAAAACCTGCAGGAC CACTTGGAGCTGTACCTGCAATACGCCTGCACCCAACCGGTTTCCCTGTATCCGTCGCTGCTCTGGTACAACCAGCCGGCCATCGGTGCCGAGTGGCTGT TCAACGGCACCGGGATTGGCGCCAGCAACCAGTTCGAGGCTGGCGGTTTCATCCGCACCCGTCCGGAATTCGATTGGCCGAACATCCAGTATCACTTCCT GCCGGTGGCGATTAACTACAACGGCAGCAACGGGGTGAAGGAACACGGTTTCCAGGCGCACATGGGTTCCATGCGCTCGCCAAGCCGCGGCCGGATCCAG GCCAAGTCCAAGGACCCACGCCAGTACCCGAGCATCCTGTTCAACTACATGGCGACCGAGCAGGACTGGCAGGAATTTCGCGATGGCATCCGCCTGACCC GCGAGATCATGCAGCAGCCGGCGCTCGATCCGTTCCGTGGCCGCGAGATCAGCCCGGGCATCGAGGTGCAGACGGACGAGCAGTTGGACCAGTTCATTCG CGAGCATGCCGAAACCGCGTTCCACCCGTCCTGCTCGTGCAAGATGGGCACCGACGACATGGCGGTGGTGGACGGCGAAGGCCGCGTGCATGGCATGCAA GGGTTGCGCGTGGTGGATGCCTCGATCATGCCGATCATCACCACCGGCAACCTGAACGCGCCGACGATCATGATCGCCGAGAAAATCGCCGACAAGATCC GCGGCCGCAAGCCTCTGCCACGCAGCACCGCACCGTACTTCGTGGCCGGCGATGCGCCGGTGCGTGGCAGGCCAATGCGTGAAGTGGGGCCTACCGCCCA GTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGCGCTGCACCGCAATCGCGAGCAGGCTCGTTCCCACAGGGGATTGGTGGTGAACACAGATTTTGTGACCACCCAAGATCCACTGTGGGAGCGAGCCTGC TCGCGATTGCGTCCACCCTGACACCCCAAATGCCTATCTGCCTTGATCCCTCCCCCGCCCAGGCCTAATCTAGAGCCGCCGCGTCAACGCGCCGCACCTC GCTGCACCGCCACTCCAGACAAGGAGGTTCCATGTTCGACTTCCACCCCCAGCTCAAGCAGCGTTTTGCTGCCTTGCGCACGGGCGCTGAATTCTTTTCC CTGCGTTACGTGCGCGAGTCCGGCCAGCACCTGTCGGTGCGCAAGAATGTCGCCGAACCGCCCAGCCTGGGCCGTGATGAAGGGGCGATGCTCACCGTGC GGGTCAACGGGGTCGAGGCGTATGCCGCTACCAACGACCTGTCCCAGGCCGGCCTGCAAGCGGCACTGGAATGCGCCGAGAAACATGCTCGCGGGCTCAA
|
|
| Amino Acid Sequence |
>choline dehydrogenase
MSQTFDYIIIGAGSAGNTLATRLTEDEGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYNWAYETDPEPHMDGRRMECGRGKGLGGSSLINGMCYIR GNALDYDNWAKLPGLEDWTYLDCLPYFRKAETRDIGPNDYHGGDGPVSVTTPKAGNNPLFHAMVEAGVQAGYPRTEDLNGYQQEGFGPMDRTVTPNGRRA STARGYLDIAKKRSTLTIVTHALTDKIIFEGKRAVGVRYLVGAAEERVEARARKEVLLCSGAIASPQILQRSGVGPAKLLESLDIPVVHDLPGVGENLQD HLELYLQYACTQPVSLYPSLLWYNQPAIGAEWLFNGTGIGASNQFEAGGFIRTRPEFDWPNIQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSPSRGRIQ AKSKDPRQYPSILFNYMATEQDWQEFRDGIRLTREIMQQPALDPFRGREISPGIEVQTDEQLDQFIREHAETAFHPSCSCKMGTDDMAVVDGEGRVHGMQ GLRVVDASIMPIITTGNLNAPTIMIAEKIADKIRGRKPLPRSTAPYFVAGDAPVRGRPMREVGPTAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|