Pseudomonas sp. URIL14HWK12:I7, H032_RS0124365
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I7 H032DRAFT_scaffold00002.2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATGTCGCACTGCACGATGCACGTATTCAAGACTTTGGCGGCGCTGGCCATGACCCTGCTGTTGGGCGGTTGCACCACGTTGTCGCCCTTCTCGACGATGA CCAAGCTCACCCTCACCCTGACGGCCAGTGATCAGCTCAACCCCGACCTCAATGGGCGGCCATCGCCAGTGGTGGTGCGGTTGTTCGAACTCAGGCATCC GGTAGCCTTTGAAAACTCGGACTTCTTCAGCCTCTATGAGCGCGCGAGGGAAACACTGGCCCCCGATCTGATTTCCAGCGAAGAGCTGGAATTGCGTCCA GGTGAAACCGTCGAGCTCAGGCTCGGTATCACTGGGAATGGCCGTTACGTCGGCATACTCGCGGCGTACCGAGACCTGCCACACGCCCGCTGGCGCTACA CACTGCCAGTGGCTGCGACGCAGTTGACCGAAGCGAACCTGATCCTCGACCAGGATGGGATCGCCAACACGCTTGAAAGACAGGCCAAGGTAGATGACCG
|
|
| DNA Sequence for Gene |
>H032_RS0124365
ATGAATCACGATAAAGTCATCTGGCAAGAAGGCATGTTGTTGCGTCCACAACATCTGCAACACAACGATCGTTATTTCGATCACCAGTTGAAGGTTCGTA CCCGGTTGCTGGCCAGTTACGCCTGGGGATTCCTGGCGCTGGAAATCGATCTGCAATTTCTCAACATGGGCCAACTGGTGGTCAGCCAGGCCAGCGGGGT CCTGCCGGACGGCAGTCTGTTCGAGCTCGGTGGCAACACCGAGCCATTGGCCCTGGAAGTACCGTCCAATACCAGCAATACACCGATCTACCTCGCGTTG CCGTTGGTGACCGGCAATCACATCGAGTCCCGTCGTCAGGAGCAATCTGACGTGCTGGCGCGCTACACCATCTACGACGCGCAGGTGAGCGACTCCAACG CCGGCGATTCCGGCGGGAGCCAGATCAGTTGTGGGCGGCCGAACCTGCGCCTGCTGTTGGGCGAGCAACAGAGCGACCATGCGTTTGTGAAGCTCAAGCT TTGTGAGGTGCTCGATACCACCGCTGATGGGGTGATCAGACTCGACCCGGACTTTGTGCCAACCTTTATCCAGGCTCGTTCATCCCATTATTTGCTGTCG TGTCTCAAGGAGATCATCGGCATGCTTGCTCATCGAGGTGACAGCCTTGCCGAGCGGATCCGTTTCAATGGCAAGGCAGGTGGTGCGCAAGTGGGCGATT TCATGATGCTGCAACTGATCAACCGTAGCGAACTGTTGCTGCGTCATTACCTGGACCTGGAGCAAGTACATCCCGAAACGCTCTACCGAATGCTACTGGC CCTGTTGGGTGAACTGGCGACGTTCTCCAGTGACAGCAAGCGCCCGCCACTCACCAACCGCTACCAGCACAGCGACCAGGGCGCATGTTTTCGACGCCTG ATGCAAGCGATCCGCCAGGTGCTGTCGATGGTGCTCGAGCAGCACGCTATCGAGCTGCAATTGCAGCCGCGCCAATATGGAATCACCGTCTCGCCGATGC AGGACCTCACCCTGCTGGATACGGCTTCATTCGTACTGGCGGCTAGCGCCAACTGTGACAGCGAAGAGTTGCGCCATCGACTGCCGTCGAACCTCAAGGT TGGCTCGGTGGAGCGCATCCGCCAGTTGGTCAACCTGCATCTGCCCGGTATCAAGATCAGGCCTCTGCCCGTGGCTCCGCGGCAGATCGCATTCCATGCC AACAAAACTTATTTCATCCTGGAACCCAGCTCCGAAGACCTGGCGCAACTGAAGCGCTCGGCAGGCTTCGCGTTCCATGTGTGCGGTGATTTCGCGGAGC TTGAACTGAATTTTTGGGCCATCAGGAATTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACGAAATGGATAAGGAAAATCCCCAGGACGAAACAACCGTCCTGCTCGACCACCATGGACAACGTCCTGCTTCTGGCCCCTTGACCGACGCTGTTGCGCC GCCACGTTTCGAACAGTTGCAAGAGCGAATGATCTACGCCGCGCACCTACCGCGGTCCCAGGCCCTCAATGTCAGCCTTAATCCGCTGGTCGCGGCGGCG TCCGGATTGTTGTCGCAGATGGTGCAACTCAAGCACGGCCGCGAACGCGAGGACCTGCAAGCCCTTAAAGGGGAACTGAAGCGAGGCCTGGAGCAGTTCG AAGCCTGTGCCTTGCAGGACGGTGTTGAAAACAGTCAGTTGATCGCGGCGCGTTACGTGCTCTGCTCAGCGATCGACGAGGCGATCGTCACTACACCGTG GGGCCATGGAGGTGGTTGGTCACAGATAAGCCTGCTCAGCACTTTTCACAACGAAACCTTCGGTGGCGAGAAGGTCTTTCAATTGCTTGAGCGCTTGTCG
|
|
| Amino Acid Sequence |
>type VI secretion protein
MNHDKVIWQEGMLLRPQHLQHNDRYFDHQLKVRTRLLASYAWGFLALEIDLQFLNMGQLVVSQASGVLPDGSLFELGGNTEPLALEVPSNTSNTPIYLAL PLVTGNHIESRRQEQSDVLARYTIYDAQVSDSNAGDSGGSQISCGRPNLRLLLGEQQSDHAFVKLKLCEVLDTTADGVIRLDPDFVPTFIQARSSHYLLS CLKEIIGMLAHRGDSLAERIRFNGKAGGAQVGDFMMLQLINRSELLLRHYLDLEQVHPETLYRMLLALLGELATFSSDSKRPPLTNRYQHSDQGACFRRL MQAIRQVLSMVLEQHAIELQLQPRQYGITVSPMQDLTLLDTASFVLAASANCDSEELRHRLPSNLKVGSVERIRQLVNLHLPGIKIRPLPVAPRQIAFHA NKTYFILEPSSEDLAQLKRSAGFAFHVCGDFAELELNFWAIRN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|