Pseudomonas sp. URIL14HWK12:I7, H032_RS0124230
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I7 H032DRAFT_scaffold00002.2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTGAGTTCCGCATCCAGCAGACGATGATCCAGCCGGTGGAAAACAACCCGCTGAAATTCGCCCCCAATGTGGATGAAGCCTTGCTGTTGCTGTTGCGCC ACGGCAACCAGGCGTTCATGGCCCCGGACGCGGCGGTGCGTGACAGTTTCGATGACTTGCGGGCCCACCAACTGGCGGTGATGGCCGGCGTGGAAGCGGC CATCAAGCATTTGCTGGGGCGTTTCGAGCCGGCGCAACTGGAAGAGCGCATGGCCAAGCCCGGTGGGCTCTCGGGTATTTTCAGCGGCTCGCGACAGGCC CAGTACTGGCAGCAGTTTACCGAGCTCTACAGCAACATTTCCCGGGAAGCCCAGGAGGATTTCCAGGACCTGTTCGGTCGCGAGTTCAGCCGCGCCTACG AAGAACACAGTGCGCGACAGCGACGCCGCTAAGCGGCGTCGTCCCATAACAAGATTGATCGGCACACAACGGATAGCTCAAACGTCATTGAGGACGCAGG
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| DNA Sequence for Gene |
>H032_RS0124230
ATGATTCCCAGGTTTTTACTCGCAGTCGCCACCGTGCTTCTGCTGACGGCGTGCGCCAAGGATGCGGCCAACCCCCAGCCCGAAGAAGCTGAGGCCGACA CCGCCGCCATCGAGCTGCACTTTCACGCCATTGCCGGCCTCAACCCCGGCGCCACCGGCCAGCCGGCCCCGGTCCGGGTGCGCATTTTCGAACTGAAAAA TGCCGCGACCTTCGGCCGTGCCGATTATTTCGCCCTCGCCGAACGGGCCCAGGCAACGCTGGGCGCCGACCTGATCGACCAGGACGAGGTGCTGATCCAG CCCGGCCAGCAACTGAGCCTGCAACGCGACCTCGACCCGGCCACGCGGCATATCGGAATACTGGTGGGCTATCGCGAGCTGGACCAGTCGCTGTGGCGCA CGGTGATGAACGTCCCGGCGCGCGAATACACCGAATACCAGATCAGCCTCGATGTGCGCGCCGTGCGCAGCGCCGTCGTCGTCCCCCCATCCAGCCCTGC CCAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAATCGGAGCCCCCATGTCCTGGAACAATCGCGTGGTCTGGTCGGAAGGCATGTTCATTGGAACGCAGCACTTCCAACAGCATGACCGTTACCTGGAAA ACCTCATCGACGCACGCAGCCGCCCGTTGTCGGCCGGCGCCTGGGGTTTTTCCGAATTGCTGATCGACCAGGGCCTGCTGGCCCAGGGCAAGCTGGCGAT CATCTCGGCGCGCGGCCTGTTGCCGGACGGTACGCCCTTCAACATTCCCCAGGATGACCTGGCACCAACCCCGCTGAACGTCGACGACAACCTGCGCGAT GGCCTGGTGTACCTGGCCTTGCCGCTCAAGCGCGCCGGCGCCCGGGACACCGTGGACGAAGGCGAAGACCTCGGCGCTGCGCGTTATGTGAGCCAGGTGT GCGAAGTGCGTGACGACAACGCACCGTTCGAAAACCGCGCACCGGTGGCCCTCGGCTCACGGGCGCTGCGGCTGTTGACCGAACAGGATGGCATCGGCGA
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| Amino Acid Sequence |
>type VI secretion protein
MIPRFLLAVATVLLLTACAKDAANPQPEEAEADTAAIELHFHAIAGLNPGATGQPAPVRVRIFELKNAATFGRADYFALAERAQATLGADLIDQDEVLIQ PGQQLSLQRDLDPATRHIGILVGYRELDQSLWRTVMNVPAREYTEYQISLDVRAVRSAVVVPPSSPAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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