Pseudomonas sp. URIL14HWK12:I7, H032_RS0117300
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I7 H032DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCCCGGCATTTCCCACTGACACGGAGTTTTTGTCATGGCTCGTGCATCACACACCACCGTCAGGGCGGCCATCAAGCCAACGCGCAAAACCGGCACCGG GGGCCTGTCTCCCTGGCGCGAAAGCCTGGTCAAGAAAGTGATTCTCGACGGCCTTAGCGACACGCTGGAAATCACCGAACTGGCCAAGGCCTGCGCCCTG TCCCGCAGTCATTTTTCCCGAGCATTCAAATGCAGCACCGGCCAGTCCCCTCAAGCCTGGATCCGTAGCCAGCGCATCGCCCGGGCCAAGCAACTGATCC GGGAGACCGACTTGACCCTGACGCAAATCAGCCTGGAATGCGGGTTCTGCGACCAGGCGCACTTTTGTCACATCTTCACCCACAGCGAAGGCATCAATCC GTTTGCCTGGCGGTGTCGGGAACTGCGCGCTCAGCCGTACACACCTGGCTGCGCGTAGTACCGCCCCCTTCGCCCGCCCAATTTCACATGGAAATGAAGC
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| DNA Sequence for Gene |
>H032_RS0117300
ATGTTGCCTGCACAACACCACTCAACCGTCACCCTGAAACCGCTCTGGCTGCTTGCCCTGCTCACCGGCAGCGCCGCACCGGCGATGGCAGCGCAGCTCG CGCAAAGCACGCCTGGCTTTCTCGACGGCGCGACGCTGGAAGTCCTCAGCCGCAACTTCTACCTCAACAATGACTATCGCACCCCGACACCGGCCGGCAA AAGCTACAAACAGGAATGGGCCCAGGGCTTCATCGCCTCGTTCGAGTCCGGCTTCACCCCCGGCACCATCGGCGTAGGCATCGATGCCCACGCGTTCCTG GGGTTGAAACTGGACGGCGGCAAGGGGCATTCCGGAACGGGATTGTTGCCGCTGGATGAGAACGGACGAAGCGAGGATCACTACTCCAGTGCGGGTGGCG CGCTGAAATTCAACACCTCACGCACCACCCTGGCGGTCGGCGAAATGACTGTGCAGAGCCCGGTATTCGACACCGCAGACAAGCGCCTGCAACCCGAATA CGCCAGCGGCCTGCTGCTCTCCAGCCGCGAGGTCGAAGGGGTCGATCTGCAGGCGGGCCACTTCAGTGCGTTCAAGAATCAGGACGCCTCGACCAGCAAG GGTGACTTTTCCGGGTATGGGGCGACGACGCGCAACGGCGCCATCGACTTCATCGGCGCCGACCTGTTCACCGGCCAAGCCCTGGGCGGCGCGCTCTACG CCTCCGAACTGAGCGACACCTGGCGCCAGTACTATGCCAACCTGCATGCCACCCTTGGCGAACTGTTCCTTGACGGCAACCTGTATCACACCCGCGACTA TGGCAAGGCCAACGCCGGGGCCATCGACACCACAGCTTATAGCCTGAGTGGCAAATACCGGCTCAATGCCCAGGCGTTCACCCTGGCCTATCAGAAAATC AACGGCGACACGCCCTTCGATTTCGTCGGCGGCGACTCCATCTACTTGGCCAACTCGATCAAATATGCCGACTTCAACGGCCCGGGTGAGCGCTCATGGC AAGCGCGCTACGACCTTGACCTGGGCACCTTGGGCGTCCCCGGCCTGAGCTTCATGGCCCGCTATGTGACTGGACGCGGGATAGACGGCAGCCATGCCCC CCAAGGCGGCGCCTACAACCTGTTCGATAGCGACACTGGCACTTACAGTCCGCAACAAGGCGCTGGCGGACGCCATTGGGAGCGCGACCTGGACCTGCAT TACATCGTGCAGTCAGGCCCGGCCAAGGACCTGTCGCTGCAACTGTCCCATGTCACCCATCGCGCCAATAGCAGCCAGGGCGGCGATGACATCGACCGGC TGTATATCGTCATCCAGTACCCCCTCAAGCTGGGGCCGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCAGCCACAATGGATACCAATACTTTATCCGTCATGGCAGCTTCAACGGTTTAACCGCGACTGACCGAAGCCGGCCTGACGATCACTTCCCAATTCACC TTCAAGCCAGTCGAGCAGCGCGCTTACCTCAACCCGACCTTCCCCGCCCGGCCGGCTGAATACCGATATCGCATCAGGCAAAGGGACACTTTCTGCGCAA GGCCTCACCAACGCACCGCTCTCAAGCAGCCCTTGGGCGGTGCGCCGCCACCCCAATGCGATGCCATGCCCCTCGACCGCCGCCTGGAGCATCAAGGGGT AGCTATCGAACACCGAGCCCTCGGAAGAGTTGTCGAACGACTGCCCAAACGCCTGGAACCAGGCACCCCACTGCATCCAATGAGGCGGCGTAGCGTGATA GTGCAAAAGGGTGTGGGACTTCAGGTCACGGACTTGCAACGCTTTGTGGGTACGCAGGTAATGAGGACTGCATACGGGAAACACTTCATCAGCGGCGGTA
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| Amino Acid Sequence |
>membrane protein
MLPAQHHSTVTLKPLWLLALLTGSAAPAMAAQLAQSTPGFLDGATLEVLSRNFYLNNDYRTPTPAGKSYKQEWAQGFIASFESGFTPGTIGVGIDAHAFL GLKLDGGKGHSGTGLLPLDENGRSEDHYSSAGGALKFNTSRTTLAVGEMTVQSPVFDTADKRLQPEYASGLLLSSREVEGVDLQAGHFSAFKNQDASTSK GDFSGYGATTRNGAIDFIGADLFTGQALGGALYASELSDTWRQYYANLHATLGELFLDGNLYHTRDYGKANAGAIDTTAYSLSGKYRLNAQAFTLAYQKI NGDTPFDFVGGDSIYLANSIKYADFNGPGERSWQARYDLDLGTLGVPGLSFMARYVTGRGIDGSHAPQGGAYNLFDSDTGTYSPQQGAGGRHWERDLDLH YIVQSGPAKDLSLQLSHVTHRANSSQGGDDIDRLYIVIQYPLKLGPF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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