Pseudomonas sp. URIL14HWK12:I7, H032_RS0112950
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I7 H032DRAFT_scaffold00026.26_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAGACCAGCAATAAGGGACCGCTGTGCGACTGCGCCTGATCGCCGTCGGTTCTCGCATGCCCAAGTGGGTGGAAGAAGGCTGGCATGAATATGCCAAGCG TCTTCCGTCCGAGCTGGCCCTGGAACTGGTGGAAATTCCGCTCAACACCCGTGGCAAGAACGCCGACGTGGCGCGCTTCATCCGCCAGGAAGGCGAAGCC ATGCTGGCCAAGGTCGGGCCGAACGAGCGCATTGTCACCCTCGAAGTCCATGGCAAGCCCTGGAGCACCGAGCAACTGGCGGTGGAGCTCGACCGCTGGC GGCTGGATTCGCGTACGGTCAATTTCATGGTCGGTGGCCCGGAAGGGCTGGCGCCGGAAGTCTGTGCCCGGGCCGATCAGCGCTGGTCATTGTCGCCGTT GACGTTGCCACACCCGCTGGTGCGGATCCTGATCGGCGAACAGCTGTATCGTGCCTGGACAGTTCTGTCCGGGCACCCTTACCACAAGTAATCCTGCCCC
|
|
| DNA Sequence for Gene |
>H032_RS0112950
ATGCCCCAGCCGATCCGTATCAAGGACCACGAAAAAGACGCCCGCCTGGTGCGGGGCCGCGTCGTGTTCGGCGCTATTACGGTGGTGACGCTGATCGGCG TGCTGATTGCGCGCTTGTATTTCCTCCAGGTGATCCAGTACGAGTACCACTCGACCCTGTCGGAAAACAACCGGGTGCATGTGCAACCGATTCCGCCGAC CCGCGGGTTGATCTTTGACCGCAATGGCGTGGTGGTGGCGGATAACCGGCCCAGCTTCAGCCTGAGCATGACCCGCGAGCGCTCCGGCGACTGGCAGCAC GTGCTCGACGTGATCGTCGAAGTGCTGCAACTGACGCCCGAGGACCGGGCGATCTTCGAGAAGCGCATGCGCCAGGGCCGACGTCCGTTCGAGCCGGTGC CGATCCTGTTCGAGCTGACCGAAGAGCAGATCGCCCTGATCGCCGTGAACCAGTTCCGCCTGCCCGGCGTCGAGGTGGTGGCGCAGTTGGTGCGTCATTA TCCCCAGGGGCCGCACTTTGCCCACTCGGTCGGCTACATGGGGCGGATCAACGAGAAAGAGCTCAAGACCCTCGATCCGGTCAATTACAGCGGCACCCAC CATATCGGCAAGACCGGCATCGAGCGTTTCTACGAGCCGGAGCTGCATGGCCAGGTGGGTTACGAGGAAGTCGAAACCAATGCTCGCGGCCGCGTATTGC GGGTGCTCAAGCGCACCGACCCGATTCCCGGCAAGGACATCGTCCTGAGCCTGGACATCAAGCTGCAAGAGGCCGCCGAAGCGGCGCTGGGCGGTCGCCG TGGCGCCGTGGTGGCGCTGGACCCGAACACCGGCGAGGTGCTGGCGATGGTCAGCCAGCCGAGTTTCGACCCGAACCTGTTCGTCACCGGTATCAGCTTC AAGGCCTACGCCGAGTTGCGCGATTCCATCGATCGGCCGCTGTTCAACCGTGTGCTGCGCGGCCTCTATCCGCCGGGGTCGACCATCAAGCCTGCCGTGG CGATTGCCGGGCTGGACTCTGGCGTGGTGACCGCGTCGAGCCGGGTCTATGACCCCGGCTATTACATGCTGCCCAACTACGACCACAAGTACCGCAACTG GAACCGCACCGGCGACGGTTATGTGGACCTGGAAACGGCCATCATGCGTTCCAACGACACCTACTTCTATGACCTGGCCCACAAGCTGGGGATCGATCGG TTGTCGTCCTACCTGGGCAAGTTCGGCATCGGTCAGAAGGTCTCCCTGGACATGTTCGAAGAGTCACCTGGCTTGATGCCGTCCCGGGAATGGAAGCGCG CGACCCGGCGCCAGGCCTGGTTCCCCGGCGAAACCCTGATCCTGGGGATCGGCCAGGGCTACATGCAGGCCACGCCCTTGCAGCTGGCCCAGGCCACGGC GCTGGTGGCGAGCAAGGGCAAGTGGTATCGCCCGCACCTGGCCAAGACCATCGAAGGCCAGAAACCGGTGGACCCGGACCCGATGCCAGACATCATCCTG CGCAATCCGTCGGACTGGCAGAAGGTCAACAACGGCATGCAGCAGGTGATGCACGGCGCCCGGGGCACCGCCCGCAAGGCGGCCATCGGCTCGCCCTACC GCATTGCCGGCAAGAGCGGTACGGCCCAGGTCGTCGCCATCAAGCAGGGCGAGAAGTACGACCGCTCCAAGGTCCAGGAACGCCATCGCGACCACGCCTT GTTCGTCGGCTTCGCGCCGGCCGACAACCCGAAGATCGTCGTATCGGTGATGGTCGAGAACGGTGAGTCGGGTTCCGGCGTCGCCGCGCCAGTGGTGCGC CAGATCATGGACGCCTGGCTGCTGGACGAGCACGGCCAGCTCAAGCCTGAATACGCAAGCCCCACCACTGCGGAGGCTACGGCCCGTGAAGAATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TTTCGACCGGATCCTCTCCAGCGAAGATGTGATGCGCCGTCGTGCCACGCTGTTGCAGCGCATGCACATCGATGGTCCGTTGCTGATCCTGCTGCTGACC CTGGCCGCAGGCAGCCTGTTCGTGCTGTATTCGGCCAGTGGCAAGAACTGGGACCTGCTGGGCAAGCAGGCCACCTCGTTCGGCATCGGCCTGGTGTCGA TGATCGTCATTGCCCAGCTCGAGCCGCGTTTCATGGCCCGCTGGGTGCCGCTGGCCTATGTGGTGGGCGTGGGCCTGCTGGTGGTGGTGGACGTGATGGG CCACAACGCCATGGGTGCCACCCGCTGGATCAACATTCCCGGGGTGGTCCGCTTCCAGCCTTCGGAGTTCCTCAAGATCATCATGCCGGCGACCATCGCC TGGTACCTGTCCAAACGCACCCTGCCGCCGCAGCTCAAGCACGTGTGCATCAGCCTGTTGCTGATCGGCATCCCGTTCATCCTGATCGTGCGCCAGCCGG
|
|
| Amino Acid Sequence |
>penicillin-binding protein 2
MPQPIRIKDHEKDARLVRGRVVFGAITVVTLIGVLIARLYFLQVIQYEYHSTLSENNRVHVQPIPPTRGLIFDRNGVVVADNRPSFSLSMTRERSGDWQH VLDVIVEVLQLTPEDRAIFEKRMRQGRRPFEPVPILFELTEEQIALIAVNQFRLPGVEVVAQLVRHYPQGPHFAHSVGYMGRINEKELKTLDPVNYSGTH HIGKTGIERFYEPELHGQVGYEEVETNARGRVLRVLKRTDPIPGKDIVLSLDIKLQEAAEAALGGRRGAVVALDPNTGEVLAMVSQPSFDPNLFVTGISF KAYAELRDSIDRPLFNRVLRGLYPPGSTIKPAVAIAGLDSGVVTASSRVYDPGYYMLPNYDHKYRNWNRTGDGYVDLETAIMRSNDTYFYDLAHKLGIDR LSSYLGKFGIGQKVSLDMFEESPGLMPSREWKRATRRQAWFPGETLILGIGQGYMQATPLQLAQATALVASKGKWYRPHLAKTIEGQKPVDPDPMPDIIL RNPSDWQKVNNGMQQVMHGARGTARKAAIGSPYRIAGKSGTAQVVAIKQGEKYDRSKVQERHRDHALFVGFAPADNPKIVVSVMVENGESGSGVAAPVVR QIMDAWLLDEHGQLKPEYASPTTAEATAREE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|