Pseudomonas sp. URIL14HWK12:I7, H032_RS0112485
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I7 H032DRAFT_scaffold00025.25_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGGTTCCCTGGCCCTGGCCAGCACCATCGGCGCCGGCAACCCGCTGACCAGCGGCGACACCCCACTGCTGACCTGCGACGTGTGGGAACACGCCTACTA CATCGACTACCGCAACGTTCGTCCGAAATACGTCGAAGCGTTCTGGAACCTGGTCAACTGGAAATTCGTCGCCGAGCAGTTCGAAGGCAAAGCCTTCACC GCCTAAGCGTCGATGCCAGACAAGAAAACCCGGCGTCGTGCCGGGTTTTTTTTGCCGGGCAAAAATGACCGCAGGCAAAATACCTCGGGTCTGGAACCCA AGAAAAAATCCCTGGAGGCCTCAAGTTGCGGCCCCTTCCAACCGACACAATGGTCGTAGAGCAATCACTCTGGAAAAAACGTACATCGGTGAGGTTTCAA GCGAAAACCCTTGTGTTTGATTGTCCCTTTGACTGACATCACAGGATTGCCAATACTCATGGCAACTTGACGCTACCCGCACGGAACAAGGAACCACTCT
|
|
| DNA Sequence for Gene |
>H032_RS0112485
TTGAAGCTGGAACTCAAGAACAGCTTGTCTGTGAAGTTGCTCCGGGTCGTGCTCCTCTCGGCATTGATCGTTGGCATGGTCTTGAGCTGCGCCCAGATCG TGTACGATGCCTACAAAACCAACCAGGCCGTCGCCAGTGACGCCCAGCGGATCCTCGACATGTTCCGTGATCCTTCGACCCAGGCCGTCTACAGCCTGGA CCGGGAGATGGGCATGCAAGTGATCGAGGGCCTGTTCCAGGACGAAGCCGTACGCATGGCTTCCATCGGCCATCCACGCGAAACCATGCTCGCCGAAAAA ACCCGGCCCTTGCAGCACTCCGAAAGCCGCTGGCTGACCGACCTGATCCTGGGCAAGGAGCGCACCTTTACCACGCAACTGGTGGGACGCGGCCCCTATA GCGAATATTACGGCGACCTGAGCATTACCCTCGACACCGCCACCTACGGCGAAGGCTTCATCGTCAACTCGGTGATCATTTTCATTTCCGGGATGCTGCG AGCCCTGGCCATGGGCCTGGTGCTGTACCTGGTCTATCACTGGCTGCTGACCAAACCATTGTCGCGGATCATCCAGCACCTGACCGAAATCAACCCCGAT CGCCCCAGCGAGCACAAAATCCCGCAGTTGCGCGGTCACGAACAAAACGAGCTGGGCCTGTGGATCAATACGGCCAACCAACTGCTCGAATCCATCGAGC GCAACACGCACCTACGCCACGAAGCGGAAAACAGCCTGCTGCGCATGGCCCAGTACGACTTCCTCACCGGCCTGCCCAACCGCCAGCAGCTGCAACAGCA ACTGGACAAGATCCTGGTGGACGCCGGGCGCCTGCAACGCCGGGTGGCGGTGCTGTGTGTGGGGCTGGATGACTTCAAGGGCATCAACGAACAGTTCAGC TATCAGACCGGCGACCAGTTGCTGCTGGCCCTGGCCGACCGACTGCGGGCCCACAGCGGCCGGCTCGGCGCACTGGCGCGGCTGGGGGGCGACCAGTTCG CCCTGGTCCAGGCCGACATCGAACAGCCTTACGAGGCCGCCGAACTGGCCCAGAGCATCCTCGATGACCTGGAAGCGCCGTTCGCCATCGACGATCAACA AATCCGCCTGCGGGCCACCATCGGCATCACCCTCTTCCCCGAAGACGGCGACAGCACCGAGAAACTGTTGCAGAAAGCCGAGCAGACCATGACCCTGGCC AAGAGCCGCTCGCGCAATCGCTACCAGTTCTACATCGCCAGCGTCGACAGCGAGATGCGCCGCCGTCGCGAACTGGAGAAAGACTTGCGCGAGGCCCTGG CCCGCGAGCAGTTCACCCTGGTGTACCAGCCGCAGATCAGCTACCGCGACCTGCGGGTGGTGGGCACCGAAGCCCTGATCCGCTGGCACCATCCCGAGCA CGGCCTGGTGCCGCCGGATCTGTTCATTCCCCTGGCCGAGCAGAACGGCACCATTATCGCCATCGGTGAATGGGTGCTGGACCAGGCTTGCAGGCAATTG CGCGAATGGCACGACCAGGGCTTCCTCGACCTGCGCATGGCGGTCAACCTGTCGACGGTGCAACTGCACCACGCCGAACTGCCGCGGGTGGTGAACAATC TCCTGCAAATGTACCGGCTGCCGCCGCGCAGCCTGGAGCTGGAAGTTACCGAGACCGGCCTGATGGAAGACATCACCACCGCTGCCCAGCATTTGCTGAG CCTGCGCCGCTCCGGGGCGCTGATTGCCATCGATGACTTCGGGACCGGCTATTCGTCCCTGAGCTACCTCAAGAGCCTGCCGCTGGACAAGATCAAGATC GACAAGAGCTTCGTCCAGGACCTGCTCGACGACGAGGACGATGCAACCATCGTCCGGGCCATCATCCAGTTGGGCAAGAGCCTGGGGATGCAGGTCATTG CCGAAGGCGTCGAGACGGTCGAACAGGAAGCCTACATCATCGCCGAGGGCTGCCACGAAGGTCAGGGGTATTACTACAGCAAACCGCTGCCGGCACGGGA ATTGGGCCTTTACCTGAAGCAGGCCGAGCGCAGCAAGGTTTCCATCATCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TTTCTCCCCCCGGCGCCAAGCCTTTGTAGGAGCTGGCGAAGCCTGCGATCTTCGGTTTGTTCGCCTGGGATTCAAGCATCAGTGAAAAGATCGCAGCCTC GCTTCGCTCGGCAGCTCCTACAGACGCTACCGAAGGCGGCAATCTCCCATCATTAAATAAGAAATATTTACACCTGCAACCCTTTACACATAATGCAAAT CTTTCGCATTATGTCGCAGTTTCGCGCACCTCGCGCCTGTCCCGTCCATCATCGAAGCAGGATGTTTGCCATGATTCGTATGCCCCTGGCTACTGCCAGT CTGCTGGCTATCGCTATTTCCCTCGCCGGTTGCGGCGAAGGCAAAGACAAGGCCGCCGCGCCGCAAGCGCCAACGCCTGCCGCCAGCACCGCGGCACCGG TCGCCCCTGCTGCCGCCGGCAAAATCGACGAAGCTGCCGCCAAGGCCGTTGTCGCGCACTATGCCGACATCGTCTATGCCGTCTACAGCGATGCCGAATC
|
|
| Amino Acid Sequence |
>diguanylate cyclase
MKLELKNSLSVKLLRVVLLSALIVGMVLSCAQIVYDAYKTNQAVASDAQRILDMFRDPSTQAVYSLDREMGMQVIEGLFQDEAVRMASIGHPRETMLAEK TRPLQHSESRWLTDLILGKERTFTTQLVGRGPYSEYYGDLSITLDTATYGEGFIVNSVIIFISGMLRALAMGLVLYLVYHWLLTKPLSRIIQHLTEINPD RPSEHKIPQLRGHEQNELGLWINTANQLLESIERNTHLRHEAENSLLRMAQYDFLTGLPNRQQLQQQLDKILVDAGRLQRRVAVLCVGLDDFKGINEQFS YQTGDQLLLALADRLRAHSGRLGALARLGGDQFALVQADIEQPYEAAELAQSILDDLEAPFAIDDQQIRLRATIGITLFPEDGDSTEKLLQKAEQTMTLA KSRSRNRYQFYIASVDSEMRRRRELEKDLREALAREQFTLVYQPQISYRDLRVVGTEALIRWHHPEHGLVPPDLFIPLAEQNGTIIAIGEWVLDQACRQL REWHDQGFLDLRMAVNLSTVQLHHAELPRVVNNLLQMYRLPPRSLELEVTETGLMEDITTAAQHLLSLRRSGALIAIDDFGTGYSSLSYLKSLPLDKIKI DKSFVQDLLDDEDDATIVRAIIQLGKSLGMQVIAEGVETVEQEAYIIAEGCHEGQGYYYSKPLPARELGLYLKQAERSKVSII
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|