Pseudomonas sp. URIL14HWK12:I7, H032_RS0110225
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I7 H032DRAFT_scaffold00019.19_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCCAGGAACGGCTGACTGTGGCGGTCGTCGATATCGGCGCCACCATGACCACCCTCAGCGTGCTGCACAACGGGCGCATCATCTATACCCGCGAACAAT TGTTCGGCGGCCGCCAACTGACCGAGGAGATCCAGCGCCGCTATGGCCTGACACCCGAGCAGGCTGGCCAGGCAAAGAAGCAGGGTGGCCTGCCGGACGA CTATCTCAGCGAAGTGCTGCAACCTTTTCGCGAGGCTCTGGTACAGCAGGTCTCGCGGTCCTTGCAGTTCTTCTTCGCCTCGGGCCAGTACAGTGCGGTG GACCACATTCTGCTGGCCGGGGGCACGGCTTCGGTCGCCGGCCTGGATCGGCTGATCGAGCAGCGCCTGGGCACGCCGACCCAGGTGGCCAACCCGTTTA CCAACATGGCCCTGAGCAGCAAGGTCAATGCCGGCGCCCTGGCCGGTGATGCGCCGGCACTGATGATTGCCTGTGGGCTGGCCCTCAGGAGTTTTGACTG
|
|
| DNA Sequence for Gene |
>H032_RS0110225
ATGGCACGGATCAACCTGCTTCCCTGGCGCGAAGAGCTGCGTGAAGAACGGCGTAAACGCTTTTTGCTGGCCTTGGTGGGGGCGCTGATCGGCGCGGTCG GCGTGGTCCTGGTCGCGGTCCGCTACATTGACAGCGCCATCGACCGCCAGGTCGCTCGCAATAGCCATCTTTCCGAGCAGATCGCCGTGCTGGACGAGCG CATCAAGCAGATCAGCGAATTGAAGGCTCGTCGCCAGCAATTGCTGGAGCGCATGCGCATCATCCAGGACTTGCAAGGTAACCGGCCGGTCAGTGGGCGC ATCTTCGACCAATTGGTGCGGACCTTGCCGGACGGGGTGTATTTCACCGAAGTGAAGATGGAAGACCGGACGCTCTCGATCAAGGGGGCCGCGGAATCGA ACAACCGGGTCTCGGACCTGATGCGCAACCTGGACTCGTCGGACCTGTTCGACACGCCCAGCCTGACGGAGGTCAAGGCCACCACCGCTGGGCAGCTCGA CCAGGCCAATGTCTTCCAGCTGACGGTACGCCAGACTCGCCCGGCCGATGCGGAGGACGCCCAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AACCGGGGGAGTGGTTCGACGCACTGCGCAAGATCGATCTCAGTGACCTGGACACCAACAACATCGGTTCCTGGCCCGCGCCGATCAAATGGCTGGCGGG TGTCCTGCTGGTGGTCCTGGTGCTGGGGCTGGGCTATAACTTTGCCTTGAGTGACCTGGAGAACCAGTTGCAGCAGGTGCGCGAGGAAGAAAACACCCTC AAGGCGCAATTCGCGGGCAAGGCCCACATGGCCGCGAACCTGGAGCGCTACACCGAGCAGATGAAGCAGATGGAAACGTCTTTTGGTGTGCTGTTGCGGC AATTGCCCAGCGATACCGAAGTGCCGGGCCTGCTGGAGGACATTACTCGCACCGGCCTGGGCAGCGGCCTGGAGTTCGAGGAAATCAAGCTGTTGCCGGA GGTCACCCAGCCGTTCTACATCGAGTTGCCGATCCAGATCACCGTGACCGGCGGCTACCACGACCTGGCGACGTTCGTCAGTGGGGTGGCGGGGCTGCCG
|
|
| Amino Acid Sequence |
>pilus assembly protein PilN
MARINLLPWREELREERRKRFLLALVGALIGAVGVVLVAVRYIDSAIDRQVARNSHLSEQIAVLDERIKQISELKARRQQLLERMRIIQDLQGNRPVSGR IFDQLVRTLPDGVYFTEVKMEDRTLSIKGAAESNNRVSDLMRNLDSSDLFDTPSLTEVKATTAGQLDQANVFQLTVRQTRPADAEDAQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|