Pseudomonas sp. URIL14HWK12:I7, H032_RS0109285
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I7 H032DRAFT_scaffold00016.16_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCGGGCTGATGCAACCGTGGCGATTCATCCGCATCAGCGACCGCGCCTTGCGTGGGCAGATCCGCGAACTGGTGGAGCAGGAACGCATTCGCACCGCCG AGGCCCTGGGTGAGCGCAGCGATGAATTCATGACGCTCAAGGTCGAAGGTATCGACGACTGTGCCGAAGTGCTGGTGGCGGCGTTGATGGAAGATCGTGA GCGGCACATCTTCGGTCGTCGGACCTTGCCGGAAATGGACCTGGCCTCGCTGTCCTGCGCGATCCAGAACCTGTGGCTGGCTTCCCGCGCAGAAGGGCTG GGGATGGGCTGGGTGTCGCTATTCGAACCCCAGGCCCTGGCCGACCTGCTGGGCCTGCCCGCCGGGGCCAAGCCGCTGGCGATCCTCTGCCTGGGCCCGG TCGAGGGTTTTTATCCGGCGCCGATGCTCGCTCTGGAAGGTTGGGCGCAACCGCGCCCGCTCAATGAACTGCTATATGAAAACCATTGGGGAGTGAGCCC
|
|
| DNA Sequence for Gene |
>H032_RS0109285
ATGAGTGTGGCGTTGCTCAGTGCCGCCGCCGTGGCGCTGGATGCGCTGCTGGGCGAGCCCCGGCGCTGGCATCCGCTGGTGGCGTTCGGCGGTTTTGCCG ATCGCATCGAACAACGTTTCAATTCCGGCGGACGCGGTTGGCGCAGCCATGGGGTGACGGCGTGGATCATCGCCGTGGTGCCGTTGACCTTGCTCGCCAC GGCCCTTTCGTGGGCGCCGATGGTGGGCTGGCTGGTGGAGATCCTCGCCTTGTACTGTGCCCTCGGCCTGCGCAGCCTCGGTGAACATGTCGAGCCGGTG GCGCGGGCCTTGCGCAGCGGCGACCTGGCGGAGGCGCGCAAGCGTGTCGGCTACCTGGTCAGCCGCGAAACGGCGGAACTGGATGAAGCCGCCGTGGCCC GCGCCGCCACCGAATCGGTGCTGGAAAATGGCAGCGACGCGGTGTTCGCCGCGTTGTTCTGGTTCGCCGTGGCCGGCGCTCCCGGGGTGGTGTTGTACCG CCTGAGCAATACCCTCGACGCTATGTGGGGCTATCGCAACGAACGCTTCGAGCGCTTCGGCTGGGCGGCGGCAAAAATCGATGATGGGCTCAACTACATT CCGGCGCGCCTGGTGGCATTGACCTACGCGCTGCTCGGTAAAACCCGCCTGGCGCTCAAGTGCTGGCGCACCCAGGGTCCGACCTGGGACAGCCCCAACG CCGGACCAGTGATGGCCGCCGGTGCCGGAGCGCTGGGTGTCGAGCTGGGCGGGGCGGCGGTTTATCACGGCGAACTGCACCAGCGTCCAGCGCTGGGCGA AGGCGTGCCGGCGAGTGCCGACGCCATTGATCGCGGCTGGCAATTGGTCCAGCGCGGCGTATGGTTATGGCTGCTGATTCTCTGCCTGGGAGCTGAGTTT TATGCTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCACGGTGGCCGTTTGCGCAACGCAATCCGGCAATACGGCATTGCCGAGGCTGATTGGCTCGACTTGTCCAGCGGACTCGCGCCTTGGCCGTTCGACGTC CCGGCGATTCCCCTGCGCGCCTGGTCGCGCCTGCCGGAAACCGATGACGGCTTGGAGCAGGCGGCCTGCGATTATTACGGCGCGCTGAATGTGCTGCCGG TGGCCGGTTCGCAGATGGCCATCCAGCTGTTGCCGCGCCTGCGCCGGGCCGGCAAGGTCGGTGTCTTGTCGCCCTGTTACGCCGAGCACGCCGAAGCCTG GCGCCGCAGCGGCTACATCGTGCGCGAAGTGCTGGAGTCGGAGGTGGATTTCTTTCTCGACAGCCTCGACGTGCTGGTGGTGGTCAATCCGAACAATCCC ACGGGCCTGAGCCTTGCGCCCGAGCGCTTGCTGGACTGGCATGCGCGCCTGGCCCAGCGCGGTGGCTGGCTGGTGGTGGATGAAGCCTTCATGGACGTCA
|
|
| Amino Acid Sequence |
>cobalamin biosynthesis protein CobD
MSVALLSAAAVALDALLGEPRRWHPLVAFGGFADRIEQRFNSGGRGWRSHGVTAWIIAVVPLTLLATALSWAPMVGWLVEILALYCALGLRSLGEHVEPV ARALRSGDLAEARKRVGYLVSRETAELDEAAVARAATESVLENGSDAVFAALFWFAVAGAPGVVLYRLSNTLDAMWGYRNERFERFGWAAAKIDDGLNYI PARLVALTYALLGKTRLALKCWRTQGPTWDSPNAGPVMAAGAGALGVELGGAAVYHGELHQRPALGEGVPASADAIDRGWQLVQRGVWLWLLILCLGAEF YA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|