Pseudomonas sp. URIL14HWK12:I7, H032_RS0107790
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URIL14HWK12:I7 H032DRAFT_scaffold00014.14_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GACGAAACCTTGCTGTTCAGCCCCTGGCCCGGACAACTGGCCTGGCAGCAGCACCCCCTCGAATCACGCATGTATGCCAGTCGCCAGGCCGGCGAGCGCT TGCCGGCGGCGATCAAGAAACTGCTGGACGAGCAGATGCCCGGCACCCGGGACCTGGCGAATGTCTACCTGCAATGCCTGATCCTCGGGTTCCAGGGCCG GTTGCGCGGCGAGCCTGGCCAGGTTCAGCATGAGAAATGGCGCCTGGCGTTGTTCACGTTTGCCTGGCAGCACGAACCCGATTATGTCGATGTCAGCCAG CGCCTGGCGCTGTCTTCGGCGACGCCGCCAGTGCGCATGCCGGTGCAGCAATCACTGCCGGACGGCTTTCGCCTGGGGCTGGCGATCCTGGCGATGGTGT TGTTGTTGACCGGGCTGGGGCAGGTGTTCTGGCGTGACATTCGTTTGGAGCTCGAACCGGTGCTGCAACTGAACGAGTCGGTGGTTCAGGAGCAGGACTC
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| DNA Sequence for Gene |
>H032_RS0107790
ATGAGCATCCTGAGTATCGTTGCCCTGGTGGTGCTCGCCATCGTCGTGGTGCTGTTGATCGCGGCCCTGATCTGGTGGCTGCGGACCCAAGGCGGAGCGG CGATCCGCAGTTTCTATGGGGCGGTGCGCCGCATGGAACAGGAGCAGGGCACCCGGGACCGCTATCAGATGCCTTGGCTGATGATGCTCGGTAACGAAAG CGACGGCGCCCAACTGTGCGCCCAGTGGCGCTTGCAACCGACCGACAAGGCCGCCTGGTTCGGGCGCTGGTTTTCCGATGCCGAGGGCTCGGTGCTGGTG GTGCCCCAGGCGTTGTTCCTGCCCGATGAAGGCATGAACCGGCAACGGGGTAATTGGTGGCGCCTGTTGGGGCTGATGTTGCGCTTGCGCAGCAAGCGAC CATTGGATGCGGTGATCTGGACGGTGCCGTTCAGCACCCTCGATGACATCGAACACACCACCGAACTGAGCCTCAAGGTCCGGCGGTGCTTTATCGACCT GTTGCAACGGTTCGGCCTCAGCCTGCCGGTGTACGTGGTGATCACCGGGATGGAAGAGCTGCCCGGGGTCCAGGAACTGGTCAGCGCGCTGCCCGCCGAG GCGCGTGAATCGATGCTGGGCTGGTCCTCGCCCTATTTGCCGGATGCGGCCTGGCAGTCGCAGTGGAGTGACCAGGCCCTGGACCAGGTCAACGCGGCGC TGTCGCAATCGATCATCGAGATCGGTGCGCTGTCGGGGCAATTGGGCAGCGATCTGTATGGGTTGCCGGAGCGCTTCGAAGGCTTGCGACGGGCCTTGCA GATCCTGTTGGAGCCGGTGTTCCAGGGCAATGCCCAAGGCGAAGCGCCGCGTTGTCGCGGGGTGTATTTCACTGCCAGCCAGGCGCCGGCTGTCAGCGGT GATGGTTTGACCGCCGCCGACAGTGCCCAGCGGCAAACCGTGTTCGCCCGTCAATTGTGGTCACGACGGCTGGTGGCCGAGCGTGGCCTGGCCCAGCCCG TGCCGCGGCTGTTGCGCCTGCGCCAGCGCGGGCATCGGCTGGTCGGAGCGGTGGCGTTGGTGGTGGGCCTGGTCTGGTTGGGTGGCATGGTCTGGGTCTG GCACGATTCGGTGGAAGAAGCCGAAGGGCTGTCGCGGTTGATCCTCAGCACCCATAAGAATCACCTCGTGGTCGATCCTGACGAACCGCAGCTGGAACCG ACCCGGCACAACGTGCAGAACTATTGGAACATGTTGGAAAAGGCCCCGCGCTGGCGCTTTGTCTCGGTGGTCTTTCCCACTTCGTGGTTCTCTTCCGTGG ACACGCAGCTGGAGAATGGGTTGCGCCTGACTGTTCGGCACCATTGGATATTGCCTCTGCGGGACCTGCTCAATTCAGACCTGGAACAGCTCAAATCCAT CCGCAACACCGAGCGGCGGGGCAATGTGGAAAACGAAGATCCGGCGCAATGGCAGAGCTACGTGAAGGCCAAGGCGCTGGTGGACCTGGCGGTACGCCTT GAACAGCACAACCAGATGTTCAGCCAGGTGGTGAACGATCCCAAGGCACCGCTGGACGAACTGGTGCAACTGAGCAACACCGCCTTGTCCCTGGGGCTCA ACACCGGCACCTTGAGCCGGCCCCGGTTCTATAACCGGGTGCTGTTCGATGCCCAGAACAGCGATTTGAAAGGGCTGGACCTGAACGCCGCGCGCCCGGT GATCTCCGATAACTTCACCGGCCTGATGCAGCGCTGGTTGGACCATTACTTCCTGGCGGACAACTTCGTGCGCCAGGCCGGCTACCTCAAACTGCACCTG CAACGGCTGGAGGCCGGCGGCGGCAACTCCTTGAGCGAACTCGAAGACCTGATGGCGCTGATCGACGATTTGCAGACCCTGGTCAGCCTGACCAACTCGG CCTGGGGGCGGGGCAAGGGCCAGGACCTGGTCCCCGGCTACAGCCAGATGCTGGACAAGGTCAGCCACAGTACTTTGCTGGGGCCGGATATCGAGCAGGA CCTGGAGAGCCAGGCGGCGAAGTTGCAGCAGAGCTTTCGTGACCAGTGGATCGTCCAGACCGGCTCCCGGGACAATCTGCTGGTGCAACAGGGCAGTGGC CTTCTGGTCTTGCAAGACCATGTCACGGCGCTGGACGGTGCAGTGCAGGCTTTGTTCAAGCGTGATTTCGTGGCGCTGGCCATGCAGAAGGATCCGTCGG GCAACAACCCCGATTCGATGGGCCAGGGCGATGGCAGCGATGATTTCAGCGTCGCGCTGAACTACTTCGCCAGCTACAAGAGCTATGCCAATGAAGAAAT GCCGCGCATTCCGCCGGATTACCGTGACGCGCTGATGCAGGCCGCTGAAGGTGCCGCGGCCCGGGCCATGTGGTTGAGCCTGGATGAAAGCGACGAGGCG TTGCCCGGCATGGGCTTCAATGTGCAAACGACCCAGGCCGTAGCGCTGCAAAAGGCCTTTATGGACGTGCACCGTGGCGACCTGGCGATCCGTTTCCAAC GTCTGCTCAATCGCCGGGCATTGGCGCAGCTCAAGAGTGGCCTGGACGAAATCGATGCCCAGCCGCTGTTCAGCCAGCGGGCCGATGTCCAGCGTTGGGA TGGCTCGAAAAACTTCGGCTTGCAACTCTACGGTGCCAGCGATCCACAAGACCTGAAGCTGAACCTGGCCCAGCAATTCGGCGCGATGCTGCAGATCGCC GAGCAGCGAATGCCCGCGCTGGAATGGTTGATTGTCCAGCAGGACAACCTGTCGGCCCTGGAGCACGACCAGGTGGCACGCTTCATGGCCCTCAACGATG AATTGCTCAAGTACAAGAACCAGAACCCGGCCAGCTCGGCGGCTCAGCTGGAACAATTGGTGAGTCGGGACTTTATCGCCATGGACACCACCTCCTGCGC GCAGATCTTGCAGACCTCCAGCCTGCCCGGTGGTCGCGGTGACCTGGCCCTGCGCACGGTCGCGTTGCAGCAGGGCGCCCTGCAACGGTGCCTGTACCTG CAACAGAGCCAGGCGGCGACGGCCTGGAATGACGTGGCCAACTATTTCAATCAATACCTGGCCGGGCGCTTTCCGTTTTCTCAGGATGTGCGGGCCAGCG ATGCCGACCCGGCGCGGGTCCAGCGTTTGCTGGAACTGATTGACACACGCCTGCCCCTGGCCCAGGCCGGACTGACGCTGAGCCAGACGCCGGAGCGGCT GGCGGCCGAGGATTTCCTCAACCGTTTGAAACAGGCCGGTACTTGGCTCGGGCCGCTGTTCGTGCGGGACAAGAGTGGCATTCTTGGGGTGGAAATGGAC GTGCGCTGGCGTACCGATCGCGATGAGGAGCGCGGCGCCGACCAGGTGATCGCCTGGAGCCTGGACGCCGGCAACCAACAGATCAGCTACCCCGGCGGCG GCCAGCAGAACCTGCGCTGGATGGTCGGCCAGCCCGTACGCCTGACCTTGCGCTGGGCCCGTAACGGTTATCAGCGTCCGGCCAACGACCCGCTGCAACC GAACCTGGTGGTGCGCGACCTGGAGGCCGGTTGGGAGTACCAGGGGCCCTGGTCGTTGCTGCGCCTGATGCGCTCGCTGGTGTCGGTCCAGCGCCAGCCA AATGTCGACTACACCGATTTTCCCCTGGCCCTGCAACTGCCGGTGACCGCCCAGACCCAGGCCAGCACGGCGCAGCAAACGTTGATGTTCATGCGCCTGT CGTTGATGAGCCAGGGCTCCAAGCTGCCTTTGTCGATCCCACCGCTGCCGACGCGGGCGCCCCGTTCACCTTTCCTGGCGACCGCATCGAGCCCCGCCAT CGCCACCCGTGAGGAGGGCCTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTTGCCGATATCGCCTTTGCCTGAGCTGGTCAGCCAGTTGCTCGAGCCGATCAGCGCCGAATCGCCCTGTGGCCCGGACCTGCGCTACGAACCGGAATA CGACCAGTTGCGCGAATTGCGCCGGGAAGACGACACCAGCCTGCCCACCGGCGTGTGGCAGTCTTCGATCAAGCGCGCCCTGTGGCCAGACCTGGAACGG CTTGCGACCACGTTGCTGCTTGAGCGCAGCAAGGACCTGATGATCAGCGCCTGGCTGGGGGAGGCCTGGCTGCATATGGCCGGGCTGGAGGGGTTGCCGG GTAGCCTGGCGCTGGTGGCGGGGCTGTGTGAGCGCTATCCGGAGCAGTTGCACCCCCAGGCCGAGGACGGCGACCAGTCGTGGCGGGTGATCCCGCTGGA GTGGCTGGCCCGGCGCTACAGCGAAGTGCTGCTGACGCGGGTGCCGTTGTTCGACGGCCGGGAGCAGGCCTTCGCCGCTTTCTCCCTGGACGACTGGCAA
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| Amino Acid Sequence |
>type VI secretion system protein ImpL
MSILSIVALVVLAIVVVLLIAALIWWLRTQGGAAIRSFYGAVRRMEQEQGTRDRYQMPWLMMLGNESDGAQLCAQWRLQPTDKAAWFGRWFSDAEGSVLV VPQALFLPDEGMNRQRGNWWRLLGLMLRLRSKRPLDAVIWTVPFSTLDDIEHTTELSLKVRRCFIDLLQRFGLSLPVYVVITGMEELPGVQELVSALPAE ARESMLGWSSPYLPDAAWQSQWSDQALDQVNAALSQSIIEIGALSGQLGSDLYGLPERFEGLRRALQILLEPVFQGNAQGEAPRCRGVYFTASQAPAVSG DGLTAADSAQRQTVFARQLWSRRLVAERGLAQPVPRLLRLRQRGHRLVGAVALVVGLVWLGGMVWVWHDSVEEAEGLSRLILSTHKNHLVVDPDEPQLEP TRHNVQNYWNMLEKAPRWRFVSVVFPTSWFSSVDTQLENGLRLTVRHHWILPLRDLLNSDLEQLKSIRNTERRGNVENEDPAQWQSYVKAKALVDLAVRL EQHNQMFSQVVNDPKAPLDELVQLSNTALSLGLNTGTLSRPRFYNRVLFDAQNSDLKGLDLNAARPVISDNFTGLMQRWLDHYFLADNFVRQAGYLKLHL QRLEAGGGNSLSELEDLMALIDDLQTLVSLTNSAWGRGKGQDLVPGYSQMLDKVSHSTLLGPDIEQDLESQAAKLQQSFRDQWIVQTGSRDNLLVQQGSG LLVLQDHVTALDGAVQALFKRDFVALAMQKDPSGNNPDSMGQGDGSDDFSVALNYFASYKSYANEEMPRIPPDYRDALMQAAEGAAARAMWLSLDESDEA LPGMGFNVQTTQAVALQKAFMDVHRGDLAIRFQRLLNRRALAQLKSGLDEIDAQPLFSQRADVQRWDGSKNFGLQLYGASDPQDLKLNLAQQFGAMLQIA EQRMPALEWLIVQQDNLSALEHDQVARFMALNDELLKYKNQNPASSAAQLEQLVSRDFIAMDTTSCAQILQTSSLPGGRGDLALRTVALQQGALQRCLYL QQSQAATAWNDVANYFNQYLAGRFPFSQDVRASDADPARVQRLLELIDTRLPLAQAGLTLSQTPERLAAEDFLNRLKQAGTWLGPLFVRDKSGILGVEMD VRWRTDRDEERGADQVIAWSLDAGNQQISYPGGGQQNLRWMVGQPVRLTLRWARNGYQRPANDPLQPNLVVRDLEAGWEYQGPWSLLRLMRSLVSVQRQP NVDYTDFPLALQLPVTAQTQASTAQQTLMFMRLSLMSQGSKLPLSIPPLPTRAPRSPFLATASSPAIATREEGL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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