Pseudomonas sp. LAIL14HWK12:I6, D907_RS0113940
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I6 D907DRAFT_scaffold00006.6_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAAGCGTTCATGGACAACACCCCGGCAGACAGCGTGGTGGACTGCGCGGGTCGCGAGGGCCTGATCGTGCTGCGTTCATTCGGTAAATTCTTCGGTTTGG CCGGAGTGCGGCTGGGCTTCGTCGCCGCTGAGCGCAGCCTGCTGTTGCGTCTGGCCGAGTTGCTTGGCCCTTGGACCGTCAACGGCCCGACCCGGGTGCT GGCCCAGGCAAGCTTGGCCGACGAAGCTGCGCAGCGTTTGCAGACTGAACGTTGCGCTGCTGCCAGCAAGCGCCTTGCCACCTTGTTGGCTGGCACAGGC CTGGCGCCAAGCGGCGGTTGTGACCTGTTCCAGTACGTGCGCAGCGAGCGTGCCGCGCCGTTGCATGACTTTCTTGCCCGTCGCGGCATCCTGGTGCGCC TGTTCGAAAACCCTCCGGCCGTGCGCCTGGGGCTGCCCGAGAGTGCGGCCGACGAACAGCGCCTGGCCCAGGCGCTGACCGACTATCAAAAGGAATCGGC
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| DNA Sequence for Gene |
>D907_RS0113940
ATGACCACCCTCATGGTGCAAGGCACCACCTCCGATGCCGGCAAGAGCACGCTGGTGACCGCATTGTGCCGCTGGCTGTTGCGCCAGGGCGTCGCTGTGG TGCCGTTCAAACCGCAGAACATGGCGCTGAACAGCGCGGTAACCGCCGACGGCGGCGAAATTGGCCGCGCTCAGGCAGTTCAGGCCCAGGCGTGCCGGCT GGCGCCGCATACCGACATGAACCCGGTACTGCTCAAGCCCAACAGCGACACCGGTGCCCAGGTGATCATTCATGGCCGTGCGGTCACCAGCATGAATGCG GTGGCCTACCACGACTACAAGGCCATCGCCATGCAGGCGGTGCTTGCTTCGCACCAGCGCCTGAGTGCCGCCTGGCCGGTGGTCATGGTCGAGGGCGCCG GGTCACCGGCAGAGATCAACCTGCGGGCCGGCGACATCGCCAACATGGGCTTTGCCGAAGCCGTCGATTGCCCGGTGATCCTGGTCGCCGACATCAACCG TGGCGGCGTGTTCGCGCACCTTGTCGGCACGCTGGAGCTGCTTTCGCCCAGTGAGCAGGCGCGGGTCAAGGGCTTTGTCATCAACCGCTTCCGTGGCGAC ATCGCCCTGTTGCAGCCGGGGCTGGACTGGCTGGAGCAACGCACCGGCAAGCCGGTGCTGGGCGTGTTGCCGTACGTCACCGATTTGCACCTGGAAGCCG AAGACGGCATCGATGTGCGCCAAGGCGCCAAAAGCGAGCGTGTGCTCAAGGTGATCGTGCCGGTACTGCCGCGCATCAGTAACCACACCGACTTCGACCC GCTGCGCCTGCACCCGCAGGTGGACCTGCAGTTCATTGGCCCGGGCCAGCCGATTCCGGCTGCCGACCTGATCATCCTGCCGGGCTCCAAGAGCGTGCGT GGCGACCTGGCGCAACTGCGCGAGCGCGGTTGGGACAAAGCCATCGAGCGGCACCTGCGCTACGGCGGCAAGCTGATCGGCATTTGTGGTGGCCTGCAGA TGCTGGGCCGTGAAGTGCATGACCCGCTAGGCCTCGAGGGCCCTGCCGGATCGAGCCCGGGGCTTGGCCTGCTGGATTACGCCACGGTGCTTGAGGCCCA GAAGCAGTTGCGCAACGTTGCCGGGGTACTGAACCTTGAAGCGGCCCCGGTTGCCGGTTATGAGATTCACGCAGGCGTCACCACCGGCCCTGGTTTGGAA CAGCCTGCCGTGCAACTGGCTGATGGTCGTTGTGATGGCGCGGTGAGCGATGATGGGCAGATCCTTGCCACCTACCTGCACGGCCTGTTCGAGGGCAGCC ACTCGTGCGCCGCGCTGCTGCGCTGGGCCGGCCTGGAAGATGCCCAGACCATCGATTACGAAGCCCTGCGCGAGCGCGACATCGAGCGCCTGGCCGACCT GGTGGAAAAACACCTGGACACCACGCGCTTGCGCCAACTCTGTGGGGTAGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CATGCGCAGCCTGATCCTCGGTGGCGCCCGCTCTGGCAAGAGCCGCCTCGCCGAACAGTTGGCCAGTGCCAGTGGCCTGCCGGTGACCTACATTGCCACC AGCCAGCCGCTGGACGGTGAAATGAACGAACGTGTGTTGCTGCACCGCCAACGCCGTCCGGACGACTGGGGGCTGATCGAAGAACCGCTGGCCCTGGCCG CTGTGCTGCGCGCCGAAGCGGCCGAAGGCCGTTGCCTGCTGGTGGACTGCCTGACCCTGTGGTTGACCAACCTGCTGATGCTTGAAAATGACCAGCGCCT GGCTGAGGAACGAGATGCCCTGCTGGTCTGCCTTGAGCAGTTGCCTGGCACCCTGATCCTGGTCAGTAACGAAACCGGCCTGGGCGTCGTGCCCATGGGC GAGCTGACCCGGCGTTATGTCGACCTGGCCGGCTGGCTTCACCAGGCCGTGGCCGAACGTTGTCAGCGCGTTGTGCTGACCGTGGCCGGCCTGCCCTTAA
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| Amino Acid Sequence |
>cobyric acid synthase
MTTLMVQGTTSDAGKSTLVTALCRWLLRQGVAVVPFKPQNMALNSAVTADGGEIGRAQAVQAQACRLAPHTDMNPVLLKPNSDTGAQVIIHGRAVTSMNA VAYHDYKAIAMQAVLASHQRLSAAWPVVMVEGAGSPAEINLRAGDIANMGFAEAVDCPVILVADINRGGVFAHLVGTLELLSPSEQARVKGFVINRFRGD IALLQPGLDWLEQRTGKPVLGVLPYVTDLHLEAEDGIDVRQGAKSERVLKVIVPVLPRISNHTDFDPLRLHPQVDLQFIGPGQPIPAADLIILPGSKSVR GDLAQLRERGWDKAIERHLRYGGKLIGICGGLQMLGREVHDPLGLEGPAGSSPGLGLLDYATVLEAQKQLRNVAGVLNLEAAPVAGYEIHAGVTTGPGLE QPAVQLADGRCDGAVSDDGQILATYLHGLFEGSHSCAALLRWAGLEDAQTIDYEALRERDIERLADLVEKHLDTTRLRQLCGVA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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