Pseudomonas sp. LAIL14HWK12:I6, D907_RS0108855
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I6 D907DRAFT_scaffold00003.3_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TATCAGGTTTCGATCGCCGTGCGTCCGCACTTCAAGTACATGGGCGCGAACTTCGAGATCTCTCTGGTCGGGCGGCTCGATACGCAATGAGTGGTTTTTT TGAACGCTTGACGGTGGATCAGAGTACCCGTCCGCAGGCCACTCGACAGGAAAGCGCTGCGCACACGTTCGCCACCATCAAACGCCACCTCGAAACGCTG CTCAACGCCCGCCAGGGGTGCTCTCAGAGCAGTCCTGAGCTGGGCTTGCGTGACTTCAACTGGCATGACGTGAACCGCGGCGACTTGCTCGTACACGTGA GCGCGGATATTCGCCGCACCCTCCAGCGCTTCGAACCACGTATCCAGATACGCACGCTCAAGGTAGTGCCCGATAGCCATGCCCCGCTGGAGCTGCATTT CAGGCTCGATTGCCAGGTGCAGGTCAACAACCACGCAGAGCAGCTGCAACTCGAGCTGCTGGTCAACGGGCACAACCGCTACACCCGAGTGAGGTGACCG
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| DNA Sequence for Gene |
>D907_RS0108855
ATGTCACTGAAAGACCGCTTCAGCGAAGAGCTGCGTTACCTGCACGAACTGGGGAACGACTTCGCCAAGGACAACCCACAACTTGCAAGGCTGCTTGGCA CAGGTGCCAGTGACCCCGATGTCGAACGCCTGATGGAAGCCTTTGCATTCCTGACCGCCAAACTGCGGCTCAAACTGGAAGACGACCTGCCGGAGCTGAC TCACCCCATGCTGCAGTTGCTGTGGCCCAATTACCTGCGGCCCTTGCCCAGCGCGACGATCATCCAGTTCACCCCGGTCAAGCAGTCCCTCAGTCAGTCA CAGCACATTCCGAAGGGGTCGAGGTTGTGCTCGGAACCCGTGGACGGCGTAGCCTGCGAGTTCCGCACGTGCACTGCGGTGAACATTCATCCGTTCAAGA TCGACACGGTGAGTGCAACCCAGACACTCGATAACGCGGTGATCCGCATCGGACTGCAGGCACTGGTCGACCGGCCACTGAACAGCCTGGGCTGCTCCAG TCTCGACTTCTACCTCAGCGGTGATATTCGCACCGCCCGCACGTTGTACCTGTGGGTTTCCCAATACCTCAAGCACATCAACGTGATCGTCAAGGGTGAA GTTCGTCGGCTGCCGGCCGGCAGCATCTCCTTCCCGGGCTTTAGCCCCGACGACGCCTTGCTGCCCTACCCGCAGAACGTCTTTGATGGCTACAGGATCC TGCAGGAGTACTTTGTCTTCCCCCAGCGCTTCCACTTTTTCAGCGTTACCGGGCTGGATAAAGCCTGGCCAGCGCATGACAGCCTGGCGGTAAGCCTCGA GTTTCACTTCACGCGCCAGTTACCCGACACACTGCGTGTCAGCAACGCAGATTTCAGTTTGTTCTGCGCACCTGCAGTCAACTTGTTTCAGCACAGTGCC GAGCCCATCGACCTGTCCAGCGAGGACGCCTTGGCCCCACTGAAACCCAAGGGAGCCGAGCCGCACGGTTACGAAATTTTCAGTGTCGACCAGGTCATCA GCACGCGAACGACGGCCGACGGGAGTGTCGGTGAGCACCTGCGAACGTTCCGTCCCTTCGAGTCGTTCGCCCATGAGATCGAGCACGTTCAAGGACGCAC TGCGCTGTACTACCGCTACCAGGTGGAGGCGTGCCTGCGCGGCGATGGCGTCACGCACCGCATCGCCTTCGTTCGTGCCGATGCCAACAGCTATATCGGC GAGCTGGAAACTGCGTCCATCGACCTGACGTGCACCAACCGAGACCTGCCGCTGGCGTTGGGCATCGGTGACATCAACGCGCGTACCGAATTTACGCCGC CACTGGCCACCTACACCAACATCTGCAAGCCCACCCGTCCTTGTCGCCCGGTGCTGGACGGCCAGTTGCAATGGGCATTGATTTCCAACATGTCGCTCAA CTACCTGTCCCTGCTCTCGGTCGAGCCGCTCAAAGCGGTGATCCGCGCCTACGACTTCGTCGCCCTGCACGACATCCAGCAGGCGCGGACCACCCAGAAG CGCCTGGACGGCATGCGCGACATCCATACAAAGCCCATGGACTGGCTTATCAAGGGGCAACCCATTCGCGGCTTGCACACCCGGCTGAAGCTGGACCAGG CCGCCTTCCTCTGCGAAGGCGACCTGTACCTGTTCAGTTGCGTGCTTGCCCACTTCTTTGCCTTGTACGCCAGCATCAATTCCTTCCATCAGCTGGAAGT GATCAACATCACCAACAACGAGCACTACACATGGCCAATACAGACCGGCAAACAACCGCTGATCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGACAGACTGCTCGCCGAGGCGCACCAGTACAACTTCTTCCAGTTGCTGGAGCGGCTGCATGGGTTGCATGGCGACGATCTGGAACCCCGTTGGCCTGA CGAGGCTACCCGCTTGCGCGTGCGCCTGGCCTGTGACCCACGGCTGACCTTCCCCGTATCGGACGTTTACAAAGCCCAACGCATGCCCGACGAAGAGGCG CGCTACCGGGTCGTTGCCACGTTCCTCGGGTTACACGGTACCGATTCACCATTGCCCACCTATTACCTGGAGCAGGTGGCCTATGAACATGCGCAAGGCA TCGGTGTACGCCCGGCATTCTTCGACTTTTTCAACCACTACCTGCTCAGCCTGTTGCACCGCAGCTGGCGCAAATACCGGTACTACATCCGCTTCCAGCC GGGTGCCCGTGACGGGTTCTCGCAGTACGTTTTTGCCCTGCTGGGGCTGAACGACAAGCAACTGCGAGGGGATACGGCACTGCCCTGGAGCCGCCTGCTC
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| Amino Acid Sequence |
>type VI secretion protein
MSLKDRFSEELRYLHELGNDFAKDNPQLARLLGTGASDPDVERLMEAFAFLTAKLRLKLEDDLPELTHPMLQLLWPNYLRPLPSATIIQFTPVKQSLSQS QHIPKGSRLCSEPVDGVACEFRTCTAVNIHPFKIDTVSATQTLDNAVIRIGLQALVDRPLNSLGCSSLDFYLSGDIRTARTLYLWVSQYLKHINVIVKGE VRRLPAGSISFPGFSPDDALLPYPQNVFDGYRILQEYFVFPQRFHFFSVTGLDKAWPAHDSLAVSLEFHFTRQLPDTLRVSNADFSLFCAPAVNLFQHSA EPIDLSSEDALAPLKPKGAEPHGYEIFSVDQVISTRTTADGSVGEHLRTFRPFESFAHEIEHVQGRTALYYRYQVEACLRGDGVTHRIAFVRADANSYIG ELETASIDLTCTNRDLPLALGIGDINARTEFTPPLATYTNICKPTRPCRPVLDGQLQWALISNMSLNYLSLLSVEPLKAVIRAYDFVALHDIQQARTTQK RLDGMRDIHTKPMDWLIKGQPIRGLHTRLKLDQAAFLCEGDLYLFSCVLAHFFALYASINSFHQLEVINITNNEHYTWPIQTGKQPLI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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