Pseudomonas sp. LAIL14HWK12:I6, D907_RS0107465
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I6 D907DRAFT_scaffold00002.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGTGGTGCTCGGCGGTGGTGAAGTTTGCCTGCGGCTGGTCGATGAGGCCTGCCGGGTATTGGTGGCCGATGGCGTAGCCAGCCTGAAGCCACTGCGCGG CCCGGCACACGTACTGCACGCCGGGCAGCAGGCCAGCTTGCAGGTGGCAGGAGTCGGTCCGGTGACAGGCCTGGATGAATGGCGGCTGGGCTGGCGTGAG GGCGTACTGCGGCTGGATGACCGCCCCTTGGGCGACTTGTTGCACGAGCTGCGCAGGTACCGCCCCGGCGTGCTGCGTTGGGCGCCGGAACTGGAGCGCC TGCGGGTAACTGGCACTTTCCGCCTTGATGATACCGACCGGGTTCTTGCCTTGCTCGCCGCCAGCCTGCCGTTGCAGGTACAAGCACGCACGCGCTACTG GGTCAGCCTTGCTGCACGAGAAAATCGTGCTTGAGGCTGTCCCCTTTTTTTCACTCGCCGGTCATTACCGGTAGAAGAAAATAAAGGGGAGCCATTTTCA
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| DNA Sequence for Gene |
>D907_RS0107465
ATGTCAGCAGTAATGTCTTGCCGCCTGCGCCCACTGGTGCGCGCAGTGCGCCCGTTGTTCGCCATGAGCCTGTTGTTGTCCGCACCCGCCTGGGCTGATG AGCCGGCGCGCCGTGCCTATCAGGTGCCGGCCGCCAGCCTGGGCGCCGTGCTCACCCGGTTTGCCGACCAGGCCGGCGTCAGCCTTTCGCTGGACCCGGC ACTGGTCCAAGGCCGGCAGAGTAATGGCCTGTCTGGTAGCTACAGTGTCGAAGAAGGTTTCATGCAGCTGCTGCGTGGCAGCGGCTTGCAGTTGCTGCCG GTGGGTGAGGGGGCCTTCACCCTGATGCCGGCACCCGAGGCCGGTGGCGCTTTGGAAATCGCCCCGACCAGCATCGTCGGCGGGCTGGTCGCAAGCAACG AAACGCAGCCCTATGCTGGCGGCCAAGTGGCCCGGCGGGGCGCGCAAGGCCTGCTGGGGTCGCGTGATTTCATGGAAACCCCATTCAGCATCACCAGCTA CACCAGCGAACTGGTGAAGAACCAGCAGGCGCGAACCTTGGGCGAACTGATCGCCACCGACCCTTCAGTCCGGGCCACCAATCCGGCAGGCGGGCGTTTC GAGCAGTTCACCATTCGCGGCTTCAGCCTGTTCAACAGCGATGTGGCCTACAACGGCCTGTACGGTATCTTGCCGACTTACTCGATCGACATGGAAATGG CCGACCGGGTCGATATCATCAAAGGCCCCAGCCAGTTGATTAATGGCATTTCGCCGCGTGGTAGCGTGGGCGGCGGTATCAACGTGCAGCCCAAGCGGGC CACAGACAAGCCGATCACCGAGTTTACCGGCAGCTATGCGTCGGCGGGCCAGGCAGGTGGCGCGGTGGATGTTGGCCGGCGTTTTGGCGAAGGCCAGCAG TTCGGCGTGCGTTTGAATGCTGTGAAGCAGGCCGGCGATACCGAATGGGACCCCCAGCGTGTCGAGCGTGAAATGGCGGTACTGGGCCTGGATTTTCGCG GCGAGCGCCTGCGCCTGTCGGCAGACCTCGGCCACACCGAGCGTGACACCGATGCACCGCAGGAGCGTGTGCTGATCGGCGCCAACGCCAAGGTGCCGGA TGCCAATGATGTTCGCCACAACTATGCCCAGGCCTGGAGCAAGGCGCGCACCAACGACACCTTTGGTGCGTTGCATGCCGAATACGACGTCAGTGAGTCG CTGCTGGCCTATGGCGCGGTCGGTGCGCGTGAAAGCAACCATGATTTCCTGCGGCACAACGTGTCCATCACCAACGATGCCGGCGACTTCACCGTGCAGC CGCGGGACTTCACCCGCGACGAGTCGGTGCGTACCGCCATGGCAGGCCTTCGCAACTGGTTTCACACCGGGCCGGTCAGCCACGAGTTGAACCTGGCCGC CACCTACTTCTACATGGACTTCACCAACGGCGGCGCCCGCTATGCTTCGGCGCCCAGCAACCTCTACAACCCGGTAGCGACCCCGACCCCGGGCACACCC ACCCGCATCGATCCCGAGGTCTACACAGAAAACCGCTTCTCCGGTGTGGCCCTGGCCGACACCCTCGGGTTTTTCGACGACCGCCTGCTGCTGACCTTGG GCGCGCGCTGGCAGCGGGTGCAGGTGGATGACTGGAGCGACGGCGTCAAAGGCGAGACCGCCTACGACGAAGAAAAGGTCTCGCCCTCGGGCGGCGTGCT GCTCAAGGTCACTGACCAGCTGTCGTTGTACGCCAACTACATGGAAGGCCTGAGCCAGGGCAAGATCGCGCCGTCGACGTCGATCAACGAAGACCAGATT TTCCCGCCGTTCACCAGCCGCCAGGTTGAGGTAGGGGCCAAGTACGACCTGGGCCAGGTAGCGTTCACGGCCAGCGCATTTCGCATTCGCCAGCCGGCCT ACGAGACGAACGCCACCTCGCGGGTGTTCGGGCCCAATGGCAAGCGTGACAACCGTGGTATCGAGTTGAGCGTATTCGGCGAACCCGTGCAAGGCGTGCG GGTGCTGGGTGGGGTCATGTACATCGACAGCGAGCTGACCGACACCGTGGGTGGCGCCTACGATGGCAATCGCGCGCCGGCCACGCCCGAGTACAACGTC AACCTCGGCGCCGAATGGGACGTGCCGGGTGTGAACGGGCTGACTCTGACAGCGCGAGGCATTCATTCCAGCTCGCAGTACCTGGACCAGAACAACAGCA AGCAGATCGATGGCTGGGAGCGTTACGATCTGGGCGCGCGCTATGCCTTCAAGGTAGATGCTACCGAGGTTACCTTGCGGGCCAGTGTCGAGAATGTGCT GGATGATCGTTACTGGAGCTCGGCGGGGGCTTCGGATGACAGTGAGCCGGGGTTGACCCTTTCCACGCCGCGTACTTACTTGTTGTCGGCAACCATAGGC TTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCGTGCGCTCCTACACGGGATTGCGCCGGCCTGTTGAATCATGCTGGCGCAATCGCCCGGCCCAGTTTCTGCGCCTGCCCCTGCAACACCCGCATCAAA TGCATCGCCGCATGCGACGGCGGCTCGAACCGCGAATAGACAAAGCTGATATCAAAGTGAATTTCATCGGCCAGCGGCACCGCCGCCAACCCACTGTCCT GCGCCACGAATTCGTCGATCACACTGATGCCCATGCCTTGCTTCACCAGGGCCACTGCTTCGTTGGCGTTGGTGAACGACAACAGTGATTTCAATTGCAG CCCGCGCCGCTCGATGTGCCCGGCCAGCAGTTTGCCAAACGGCATGTCGGGCCTGAACAGCAACAGCGCATGGCCTTCCAGCTGCTGCAAGGTCAGCGAG CCATGCCCGGCCAAGGCGTGGTCGGGTGGCATCACCACCACCATGCGCCCGCGCATGAAGGCCTGCGAATGCAGGTGATCGTGCACCACGGGCAGGGCGG
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| Amino Acid Sequence |
>TonB-dependent receptor
MSAVMSCRLRPLVRAVRPLFAMSLLLSAPAWADEPARRAYQVPAASLGAVLTRFADQAGVSLSLDPALVQGRQSNGLSGSYSVEEGFMQLLRGSGLQLLP VGEGAFTLMPAPEAGGALEIAPTSIVGGLVASNETQPYAGGQVARRGAQGLLGSRDFMETPFSITSYTSELVKNQQARTLGELIATDPSVRATNPAGGRF EQFTIRGFSLFNSDVAYNGLYGILPTYSIDMEMADRVDIIKGPSQLINGISPRGSVGGGINVQPKRATDKPITEFTGSYASAGQAGGAVDVGRRFGEGQQ FGVRLNAVKQAGDTEWDPQRVEREMAVLGLDFRGERLRLSADLGHTERDTDAPQERVLIGANAKVPDANDVRHNYAQAWSKARTNDTFGALHAEYDVSES LLAYGAVGARESNHDFLRHNVSITNDAGDFTVQPRDFTRDESVRTAMAGLRNWFHTGPVSHELNLAATYFYMDFTNGGARYASAPSNLYNPVATPTPGTP TRIDPEVYTENRFSGVALADTLGFFDDRLLLTLGARWQRVQVDDWSDGVKGETAYDEEKVSPSGGVLLKVTDQLSLYANYMEGLSQGKIAPSTSINEDQI FPPFTSRQVEVGAKYDLGQVAFTASAFRIRQPAYETNATSRVFGPNGKRDNRGIELSVFGEPVQGVRVLGGVMYIDSELTDTVGGAYDGNRAPATPEYNV NLGAEWDVPGVNGLTLTARGIHSSSQYLDQNNSKQIDGWERYDLGARYAFKVDATEVTLRASVENVLDDRYWSSAGASDDSEPGLTLSTPRTYLLSATIG F
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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