Pseudomonas sp. LAIL14HWK12:I6, D907_RS0105400
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I6 D907DRAFT_scaffold00002.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTGGTGCCGAGCAGCTGTTGGGTCATGGTGACATGCTGTACATGCCACCGGGCACCAGCCTGCCAATCCGCGTCCACGGTGCGTTCGTTTCCGACGACG AAGTGCACCGTACGGTCGAGGCGTGGAAGCTGCGGGGCGCGCCGGATTACAACGACGACATCCTCAACGGTGTGGAAGAAGCCGGCAGTGGCTTCGATGG CGGCGGCGGTGGTGGTGGTGATGGTGAAGATTCGGAGAGCGACGCCCTGTATGATGAGGCCGTGCAATTCGTGCTGGAAAGCCGCCGCGCGTCCATCTCG GCAGTGCAGCGCAAGCTGAAAATCGGTTACAACCGCGCCGCCCGCATGATCGAAGCCATGGAAATGGCCGGTGTGGTCACCCCCATGAACAGCAACGGCT CGCGGGAAGTGATTGCCCCGGGCGGCCCGCGCGACTGAAGAACACCTTGCCGGGCGCCAACGGTGGCGCCCGGCCTTTTCAATGCTCAATGAGGATTCCC
|
|
| DNA Sequence for Gene |
>D907_RS0105400
ATGCGCGCGATTCGCATGCTGTTGGTTTCTGCCCTGACCCTGGGCTCGGTTACTGCTTATGCCGGTGAGCAAGACGTACAACGCCTGACCCAGCTGCTGG AAAAGTCGCAGACCATCGAGGCCAACTTCTCCCAGCTGACCCTCGGCGCCGATGGCACCAGCCTGCAGGAAACCTCGGGCAAGATGGCGGTCAAGCGCCC GGGCCTGTTCTACTGGCACACTGATGCGCCGCAGGAGCAGGTGGTGGTTTCGGACGGAAAGAACGTCACCCTGTGGGACCCGGATCTGGAACAGGCCACC ATCAAGAAGCTCGATGTGCGACTGAACCAGACCCCTGCGCTGCTGCTGTCCGGTGATGTGTCGAAGATCAGCCAGAGTTTCGACATTGCTTCCAAGGAGC AGGGCGAGGTGATGGACTTCACCCTCAAGCCGAAGACCAAGGACACCCTGTTCGACTCGCTGCGCGTGTCGTTCCGCAAAGGCCTGATCAATGACATGCA GCTGATCGACAGTGTCGGCCAGCGCACCAACATCCTGTTCAATGGCGTCAAGGCCAACCAGGCGGTGCCGGACAGCCAGTTCAAGTTCGACATCCCCAAA GGCGCGGACGTGATCAAGGAGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CCAGAGCCCGTCATGGACCTGTTTCGAAGCGAACCCGTCGCCCAGCCCCTGGCCGCTCGCCTGCGCCCGTCCAACCTGGACGAGTACGTGGGCCAGGAGC ACCTGCTGGCGCGCGGTAAGCCGTTGCGCGAGGCGCTGGAGCAGGGTGCGCTGCACTCGATGATCTTCTGGGGGCCGCCGGGGGTGGGCAAGACCACCCT TGCGCGGCTGCTGGCGCAGTTTTGTGACGCGCATTTCGAAACCGTGTCGGCGGTACTGGCCGGGGTGAAAGAGATCCGCCAGGCCGTTGAAGTGGCCAAG CAGCAGGCCGGCCAATATGGCCGCCGCACCATCCTGTTCGTCGACGAAGTGCACCGTTTCAACAAGTCGCAGCAGGATGCCTTTTTGCCCTACGTGGAAG ACGGCACGCTGCTGTTCATCGGTGCCACCACTGAAAACCCCTCCTTCGAGCTGAACAACGCGTTGCTGTCGCGGGCGCGGGTGTATGTGCTCAAAAGTCT
|
|
| Amino Acid Sequence |
>membrane protein
MRAIRMLLVSALTLGSVTAYAGEQDVQRLTQLLEKSQTIEANFSQLTLGADGTSLQETSGKMAVKRPGLFYWHTDAPQEQVVVSDGKNVTLWDPDLEQAT IKKLDVRLNQTPALLLSGDVSKISQSFDIASKEQGEVMDFTLKPKTKDTLFDSLRVSFRKGLINDMQLIDSVGQRTNILFNGVKANQAVPDSQFKFDIPK GADVIKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|