Pseudomonas sp. LAIL14HWK12:I6, D907_RS0104720
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I6 D907DRAFT_scaffold00002.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCGGGCAACGTTTTCTGGAGATCTGGTCCGGCCTGCCTGTGCTGTACCTGCTGATCATCCTGGCGAGCTTCGTGCAGCCCAACTTCTGGTGGTTGTTG GGCATCATGCTGCTGTTCTCGTGGATGAGCCTGGTGGACGTGGTACGCGCCGAGTTCCTGCGCGGGCGCAACCTGGAATACGTGCGCGCCGCCCGCGCGT TAGGCATGCGCAACGGCGCGATCATGTACCGGCACATCCTGCCCAACGCCATGATCTCGACCATGACCTTCATGCCGTTCATCCTCACCGGCGCCATCGG CACCCTCACCGCCCTGGACTTCCTCGGCTTCGGCCTGCCTGCCGGTTCACCATCGCTGGGCGAACTGGTGGCCCAGGGCAAGTCCAACCTGCAGGCGCCG TGGCTGGGCATCAGCGCCTTTGCCGTGCTGGCGCTGATGCTGAGCCTGCTGGTGTTCATCGGCGAATCCGCCCGCGATGCCTTCGACCCGAGGAAGTGAC
|
|
| DNA Sequence for Gene |
>D907_RS0104720
ATGAGTGAACAGAACCTGATCGAAGTGCGCGACCTGGCCGTTGAGTTTGTGACCGGGGACCAGGTCAACCGCGTGGTCGACGGCATCAGCTTCGACATCC GCAAGGGCGAGACCTTGGCACTGGTGGGCGAAAGTGGCTCGGGCAAGTCCGTCACCGCGCACTCGATCCTGCGCCTGCTGCCCTACCCCCTGGCCCGCCA CCCCAACGGCAGCATCCGCTACGAAGGCAAAGACCTGCTGCAGCAGAACGAGAAGACCCTGCAACGCATTCGCGGCAACCGCATTGCGATGATCTTCCAG GAGCCGATGACCTCGCTCAACCCGCTGCACTGCATCGAGAAGCAAATCAACGAAATCCTGTTGCTGCACAAGGGCCTGACCGGCAAGGAAGCGACGGCAC GCACGTTGGAGCTGCTGGAACTGGTCGGCATACCCGAACCGCAAAAGCGTTTGAAGGCCCTGCCCCACGAGCTGTCGGGCGGGCAACGCCAGCGGGTGAT GATTGCCATGGCGCTGGCCAACGAGCCGGAGTTGCTGATTGCCGACGAACCGACCACGGCGCTGGACGTGACTGTGCAGTTGAAGATCCTCGACCTGCTC AAGGAACTGCAGGCGCGCCTGGGCATGGCACTGCTGCTGATCAGCCACGACCTGAACCTGGTGCGCCGCATCGCCCACCGCGTGTGCGTGATGCAGCGCG GGCAGATTGTCGAACAAGCCGAATGCGCCACGCTGTTCAGTTCCCCGCAGCACCATTACACGCAGATGCTGATCAACGCCGAGCCCAGCGGGCTGCCGGC GCACAACCCGGTGGGCGCGCCGTTGCTTGAGGTGGATGACCTGAAGGTGTGGTTCCCGATCAAGAAGGGGCTACTGCGGCGCACCGTTGACCATGTGAAG GCGGTGGACGGCGTCAACTTCAGCCTGCCTCAAGGACAGACGCTAGGCATTGTTGGCGAGTCCGGGTCGGGCAAGTCGACGCTCGGCTTGGCGATCCTGC GGTTGATTTCCAGCCAGGGTGGCATTCACTTCCATGGGCAGAATTTGCAAGGGCTGATCCAGAAGGCCGTGCGGCCTCTGCGCCGGGAAATGCAGGTGGT GTTCCAGGACCCGTTCGGTAGCCTGAGCCCGCGCATGTGCGTGGCGGACATCGTGGGTGAAGGGTTGCGCATTCACGGCATTGGTACGGTGCAGGAGCAG GAAGCGGCGATCATTGCAGCGCTGGAGGAAGTGGGGCTGGACCCGCGTACACGGCATCGCTATCCCCATGAGTTTTCGGGTGGGCAGCGCCAGCGCATAG CCATTGCCCGTGCATTGGTGTTGAAGCCCGCGCTGATCCTGCTGGATGAGCCCACCTCCGCGCTGGACCGCACCGTGCAGCGGCAGGTGGTGGAGTTGCT GCGTAATTTGCAGCAGAAGTACAACCTGACCTACCTGTTCATCAGCCATGACCTGGCGGTGGTGAAGGCGCTGAGTCACCAGTTGATGGTGATCAAGCAT GGGCATGTGGTGGAGCAAGGGGATGCGCAGGCGATTTTCCATGCGCCGCAGCATCCGTATACGCGGCAGTTGCTGGAGGCGGCGTTTCTTGAGGTGGATG ATGCCGAACCGGGCATGATGCGCTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AGATCAAAGTATGGGCGGTTGCTGCAACTGCCCATACGCTGACCGCTGCAGGACCGTACAGCATTGGAGGCTTCCTCGTGACTATCTCTCCGTCCCCCAT CGGCCCGATGCTCAGGCACTGGCGCATGCTGAACCGGGTCAAGCAGCTGCACGCCGCGCAGATGTTCGGGGTGTGCCTGTCCCCATAGTTCAGCCCTTCA TCAGATTTTCTGACAACAATCGTCTTTCATCATCAGCCAGAACAGGCATAAATTCTCCACCGTCAACTCCCAGTAGCAACGGTAGAGCCTCATGTCCAGC CCACAGCACCCGTCCGCCTCCCCTGCCCTGACCACGCTGATCAGCCGTTCCGGCCTGCCCAGCCCTTCACTCAGTGAAACGCAGGCTCACGCCGTATTGC AGGCGCATTATGGTCACGACGGTGACCTGGCGGCACTGGGCAGCCAACAGGACCTCAACTTCCGCGTGGACGCGCCGCAAGGGCGCTACGTGCTCAAGGC
|
|
| Amino Acid Sequence |
>microcin ABC transporter ATP-binding protein
MSEQNLIEVRDLAVEFVTGDQVNRVVDGISFDIRKGETLALVGESGSGKSVTAHSILRLLPYPLARHPNGSIRYEGKDLLQQNEKTLQRIRGNRIAMIFQ EPMTSLNPLHCIEKQINEILLLHKGLTGKEATARTLELLELVGIPEPQKRLKALPHELSGGQRQRVMIAMALANEPELLIADEPTTALDVTVQLKILDLL KELQARLGMALLLISHDLNLVRRIAHRVCVMQRGQIVEQAECATLFSSPQHHYTQMLINAEPSGLPAHNPVGAPLLEVDDLKVWFPIKKGLLRRTVDHVK AVDGVNFSLPQGQTLGIVGESGSGKSTLGLAILRLISSQGGIHFHGQNLQGLIQKAVRPLRREMQVVFQDPFGSLSPRMCVADIVGEGLRIHGIGTVQEQ EAAIIAALEEVGLDPRTRHRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRNLQQKYNLTYLFISHDLAVVKALSHQLMVIKH GHVVEQGDAQAIFHAPQHPYTRQLLEAAFLEVDDAEPGMMR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|