Pseudomonas sp. LAIL14HWK12:I6, D907_RS0102755
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I6 D907DRAFT_scaffold00001.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCAACCATGACAACGCACGATCTTGATGCTCACCAAGTAAGTAACAGCACCACCGTCGGCCAAGAAACCTGCATGGACCTCTTCCGCGTCCAGGCCAAT ATCCCGTTCAACCATGCCTTCTCCGAACTGTCAGTCATGCTCGGATGCATCAACCACCTGACGACCGAAGCCGAGATGGAAAATGACCGATTGGCAGGTA GCGCAGCAAGAATCCTGAGTGGCTTTGCCAAAGCACTGATCGATGACATTGAGTTGGGGCTGAACAGGACTTCAGTTCAGGTCTGACCTGTACCGGCCTC TTCGCGGGCATGCCCGCTCCCACAGGTACAGCGCAGGTCTCAAGGTGGGCACTTAGCCTGTGGGAGCGGGCGAGCCCGCGAAAGGGCCCGCGTAGGCGTC GAAAATGCCCGGTTGTTCCCCGCCAGTGATGTTTATCGAACCCTGAACTACGCTGACAGTCGCATCCCACAAATCATTTGTGCGCAAGCAAGGAGCCAGC
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| DNA Sequence for Gene |
>D907_RS0102755
ATGGCGTTGGTGCGTCCGCTGTCGGTCGTTTGCCTGGGGCTGCTGTACATGCTCACCGGCTGTAGCAAGGAAGAGGTCCCCGAGACGCTGCCTCGGGTCG GTGTGCAACAGGTTCAACCCACAGATTTCGCTGCCAGGGTCACCCTGACGGGCGATGTGCAAGCGCGGGTGCAGACTGACCTGTCGTTCCGTGTGGGCGG CAAGATCATTTCGCGCAGCGTCGATGTGGGCGACCACGTCAAGGCCAACCAGGTGCTGGCGCGGCTGGACCCGAAAGACCTGCAGAACAACGTCGACTCG GCGAAGGCCGAGGTGTTCGCCGCCCAGGCGCGGGTCACCCAGACCAGCGCCGCCTTTGTACGCCAGCAAAAACTGCTGCCCAAGGGCTACACCAGCCAGA GTGAATACGACTCCGCCGAAGCCGCGCTGCGCAGTAACCAGAGCGCGCTCAAGGCCGCCCAGGCGCAACTGGCCAACGCCAACGAACAGCTCAGCTACAC CGCACTGGTCTCCGAGGCCGCCGGGGTCATCACCGAGCGCCAGGCCGAAGTGGGCCAGGTGGTGCAGGCCACCATGCCCATCTTCAGCCTGGCCACCGAT GGCGACCGCGATGCGGTGTTCAACGTGTACGAATCGCTGCTGGTCGCACCGCCCAGCGATGCCGGGGTGATCGTCAGACTGCTGGATAACCCCAACGTCC AGGCACATGGCTTCGTGCGTGAAATCACTCCCACGGTGTCGGCGCAAAGCGGCACAGTGCAGGTCAAGGTAGGCCTCAAAGACGTGCCACCGGGCATGCA GTTGGGCGCACCGGTCACCGCCACCACCAATGCCCAGGGGCGGCCCAGCGTCGAGCTGCCGTGGTCGGCACTGACCAAAGCCCTGCATGAGCCCGCTGTA TGGGTGGTGGGCGAGGGCGACAAGGTTGAACTGCGCAAGGTCGAGGTCAGCCGTTACCTCACCGGCAAGATCGTGGTCGCCAGTGGCCTGAAAGGTGGCG AGACCGTGGTGGTCAATGGCGGCCAATTGCTGCACCCCGGCATGCAGGTGCAGAAGGTCGATGCCAAGGCCGAAGGGGGTGAGCTATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGCGCCTGCTGCTGATGCTGTCGGCTGGCGTGCTGCTGGTGGGGTGCAGCAGCGAGGACGAGGTGCCAGAGCCGATTAGGCCCGTGCTGTCGGTGAAAGT CGAACCCCAGGTGCAGTCGCAGCTGGGCCGCTTTGCCGGCAGTATTCAGGCACGCTTTGAAAGTACCTTGGGCTTTCGGGTTTCCGGGCGTATCGCCCGT CGCTGGCTGGATGTGGGCGCCCAGGTAAAACCGGGCGACACCTTGGCAACCCTCGACCCGACCGACCAGCAAAACCAACTGCGTGCTGCCGAAGGCGACC TGGCCAAGGTACAGGCCCAATGGATCAACGCTCAGGCCGACGCCCGCCGCCAGCAGCAACTGTACGACCGCGGGGTAGGCGCCCAGGCCCAGCTGGACAT CGCCCAGACCAACCTGAAAACCACCAGCGCGGCGTTGGAGCAGGCGCGCTCTGCGCTCAGCCAGGCGCGTGACCAGCTCGACTACAGCACCCTGCGCACC
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| Amino Acid Sequence |
>RND transporter
MALVRPLSVVCLGLLYMLTGCSKEEVPETLPRVGVQQVQPTDFAARVTLTGDVQARVQTDLSFRVGGKIISRSVDVGDHVKANQVLARLDPKDLQNNVDS AKAEVFAAQARVTQTSAAFVRQQKLLPKGYTSQSEYDSAEAALRSNQSALKAAQAQLANANEQLSYTALVSEAAGVITERQAEVGQVVQATMPIFSLATD GDRDAVFNVYESLLVAPPSDAGVIVRLLDNPNVQAHGFVREITPTVSAQSGTVQVKVGLKDVPPGMQLGAPVTATTNAQGRPSVELPWSALTKALHEPAV WVVGEGDKVELRKVEVSRYLTGKIVVASGLKGGETVVVNGGQLLHPGMQVQKVDAKAEGGEL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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