Pseudomonas sp. LAIL14HWK12:I6, D907_RS0100045
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I6 D907DRAFT_scaffold00001.1_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGTGCGCGGCATTCAGTTCGCCGTTGGCCTGCAGGGTGCTGAGCATCTGCCCCTGGGGGAACTGGCGCATCTTCAGCGCGTATTCGATGGCCTCGCCTTC GCCACCGATCTGCGGCGCATCGACGCTACCGGTGATCGGCAACACTTCCAGGTAAAGGCCGTCGGTCATGCGCTGGTTCAAGCGCAACTCTTCGTTACAG AAATGCTGGCGCTGGTCCAGGCTGGTGAAGTCGAGGAATCCGAAGTTCATCGGTTTCTTGATCTTGTAGGCATACTCGCCGGTGAGCAGCACCCAGGAGA TATGCGTCTCGATGAGCTGGAACCCATCCACAGGGTGAGGGTACAGGGCTGGGTTCTGCAACGCAGTGATAAGAGCTTGGCTCACGGCAAATCCTTCCGG GGCAAGGGAATTCGAATGCGCCATTATGGTCAATGGTGCCGTCCCTGCCTACCGCCGGGCCGTCTGCCCAGCCTTTATAAAGTGCGTATAATCCGCCGCC
|
|
| DNA Sequence for Gene |
>D907_RS0100045
ATGACCCGAACCCGAAATCCCCGTACCCCTCCGAAACGCCCGACCGGCCGCTCCCGCGCCTGGCTGGGCTGGGCTTTGAAGCTCAGCCTGGTAGGCCTGG TGATCGTTGCCGGCTTCGCGGTTTACCTCGATGCCGTTGTGCAGGAGAAGTTCTCCGGCAAGCGCTGGACCATCCCGGCCAAGGTGTATGCCCGGCCACT GGAGTTGTTCACCGGCCAGAAACTGAGCAAGAACGACTTCCTCACCGAGCTCGATGCGCTCGGTTACCGCCGTGAGAGTGCGGCCAACGGCCCGGGTGCT GCGGCGATCAACGGTAATACCGTCGACCTCAATACCCGAGGCTTCCAGTTCTACGAGGGCATGGAGCCGGCGCAGTTCGTGCGCGTGCGTTTCTCGGGCG ATTACGTGGCGGGCCTTTCCGGCGCCAACGGCAAGGCACTGGATGTGGTGCGCCTGGAGCCGCTGATGATTGGCGGTATCTACCCGAAAAACCTCGAAGA CCGCATCCTGATCAAGATCGACCAGGTGCCCAAGTACCTGCTCGAAACCCTGGTGGCCACCGAAGACCGCGACTTCTACAGCCACTTTGGTGTGTCGCCC AAGTCCATCGCCCGGGCCATGTGGGTCAACACCTCGTCCGGCTCGATGCGCCAGGGTGGCAGTACCCTGACCCAGCAGTTGGTGAAAAACTTCTACCTCA GCAGCGAGCGCAGCCTCAGCCGCAAGCTGACCGAGGCGATGATGGCGGTGCTGCTGGAGCTGCACTACGACAAGCGCGAAATCCTGGAGGCCTACCTCAA CGAGGTGTTCGTCGGTCAGGACGGCCAGCGTGCCGTTCACGGCTTCGGTTTGGCCAGCCAGTTCTTCTTCAGCCAGCCGCTGTCGGAGCTGAAACTGCAC CAGATCGCCTTGCTGGTAGGCATGGTCAAAGGCCCGTCCTACTACAACCCACGGCGTTACCCTGACCGCGCCCTGGCCCGCCGTAACCTGGTGCTGGACC TGGTGGCCGAGCAAGGCGTGGCCAGTCAGGCAGAAGTCGATGCAGCGAAGAAGATGCCGCTGGGCGTGACCAAGCGTGGCAGCCTGGCCGACAGCTCGTT CCCGGCCTTCCTCGACCTGGTCAAGCGCCAGTTGCGCCAGGACTACCGCGACGAAGACTTGACCGAAGAAGGGCTGCGTATCTTCACCAGTTTCGACCCG ATCCTGCAGATGAAGGCCGAGACCTCGATGAACGAGACCTTCAAGCGCCTGGCGGGGCGCAAGGGCGCTGACGAGGTGGAGTCGGCAATGGTCGTGACCA ACCCGGAAACCGGTGAAGTACAAGCCCTGATCGGAAGCCGCCAGGCAGGCTTCGCCGGCTTCAACCGGGCCATCGACGCTGTGCGCCCGATCGGCTCGCT GGTCAAACCGTCGGTGTACCTGACGGCGCTGGAGCAGCCGAGCAAGTACACCCTGACCAGCTGGGTGCAGGACGAGCCATTCTCGGTCAAAGGTGCCGAC GGCCAGGTCTGGCGCCCGCAAAACTATGACCGCCGCCCGCACGGGACCATCTACCTGTATCAGGGGTTGGCCAACTCGTACAACTTGTCGACCGCCAAGC TCGGTCTGGAAGTGGGCGTGCCCAACGTGATCAAGACCATCGGCCGTCTGGGGGTGAATGTCGACTGGCCAGCCTTCCCGGCCATGCTGCTGGGTGCCGG TGGCATGTCGCCGATGCAGGTTGCGACCATGTACCAGACCATCGCCAACGGCGGCTTCAATACACCGATGCGCGGTATCCGCAGCGTGCTCACTGCCGAA GGCGAACCGCTCAAGCGCTACCCGTTCCAGATCCAGCAAACCTTCGACCCGGGCGCCATCTATCTGGTGCAGAACGCCATGCAGCGGGTGATGCGTGAAG GTACCGGGCGCTCCGTGTACAACACCCTGCCACGCTCGCTGACCCTGGCGGGCAAGACCGGTACCAGTAACGACTCGCGCGACAGCTGGTTCTCCGGCTT CAGCCAGGACCTGCTGGCCGTGGTGTGGATGGGCCGTGACGATAATGGCAAAACGCCATTTACCGGTGCCACCGGTGCCCTGCAGGTCTGGACCAGCTTC ATGAAGAAGGCCGACCCGCTGCCGCTGGACATGCCGCAGCCGGACAACGTGGTGCAGGCCTGGATCGACCCGTACACGGGTCATGGGTCTGATGCCAGCT GTCCGGGAGCGGTGCAGATGCCGTATATTCGCGGCAGTGAGCCCCCCGCCGGCGCGACCTGTGGCGGCGAGCAGGACCCAGTCGAATCGGTCATGGACTG GGTCAAGGGCTGGATGAACTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCACAGGCTGCATTGATGAGGTGTGACGTGAACAAGTGGCTGTTTCCTGCCGTGACGGCGCTGGCAGTGCTCCAGGGGTGCTCCAGCGTCCCGCGCGGCA ATATTCCGGTGGTCGATTCGAGCACCCGCGTGTCCAACAGCGAACGCGTAACAGCCAACCGCACGGCGGGTGGCTATAACACGGGCACCGCCCAGGCGCA GACGCTAACCGAGGATTCTGGCGTCACTGTGATGATCCCGCAGGGCGCTGGCGCCTCGGGCATCCAGACGTTCCCGGCGGCCAATGGTGCGGCGCCAATC AGCACCTCGCCGATCACGCCTGGCCCGATTACCCCAGGCCCGGTAAGTTCGGCGCCAATGACCACCAATCCAAACCCGATCGCCGACGAACCGTTCGACA TCGCCGCGATGAACAGCACCCCGCAGAGCACCAGCGCGCCAACCGGCATTCCGCGCAGCAGTGCTGCCGGCGGGCTGTCTGCCGACGAGCAACTCGACGG
|
|
| Amino Acid Sequence |
>penicillin-binding protein 1B
MTRTRNPRTPPKRPTGRSRAWLGWALKLSLVGLVIVAGFAVYLDAVVQEKFSGKRWTIPAKVYARPLELFTGQKLSKNDFLTELDALGYRRESAANGPGA AAINGNTVDLNTRGFQFYEGMEPAQFVRVRFSGDYVAGLSGANGKALDVVRLEPLMIGGIYPKNLEDRILIKIDQVPKYLLETLVATEDRDFYSHFGVSP KSIARAMWVNTSSGSMRQGGSTLTQQLVKNFYLSSERSLSRKLTEAMMAVLLELHYDKREILEAYLNEVFVGQDGQRAVHGFGLASQFFFSQPLSELKLH QIALLVGMVKGPSYYNPRRYPDRALARRNLVLDLVAEQGVASQAEVDAAKKMPLGVTKRGSLADSSFPAFLDLVKRQLRQDYRDEDLTEEGLRIFTSFDP ILQMKAETSMNETFKRLAGRKGADEVESAMVVTNPETGEVQALIGSRQAGFAGFNRAIDAVRPIGSLVKPSVYLTALEQPSKYTLTSWVQDEPFSVKGAD GQVWRPQNYDRRPHGTIYLYQGLANSYNLSTAKLGLEVGVPNVIKTIGRLGVNVDWPAFPAMLLGAGGMSPMQVATMYQTIANGGFNTPMRGIRSVLTAE GEPLKRYPFQIQQTFDPGAIYLVQNAMQRVMREGTGRSVYNTLPRSLTLAGKTGTSNDSRDSWFSGFSQDLLAVVWMGRDDNGKTPFTGATGALQVWTSF MKKADPLPLDMPQPDNVVQAWIDPYTGHGSDASCPGAVQMPYIRGSEPPAGATCGGEQDPVESVMDWVKGWMN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|