Pseudomonas sp. LAIL14HWK12:I9, D903_RS0124420
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I9 D903DRAFT_scaffold00008.8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGGCGAAGAGATCGAAGCCAAGATCATCAGCGTTGACCGCAAGTCCCGCGTTATCAGCCTGTCGATCAAATCGAAAGACGACGCTGAAGAGCGCGAAGCC ATCCAGAGCCTGAAAAACGCTCCGGAAGCGGCTGCCGACACCACCATGGCTGCGCTGCTGCGCGAAGCAATGGCCAAGCAGAACTGAGTTCTGTTTGATC GGTAAAAAAGGGCGACCCTCGGGTCGCCCTTTTTTTGGAGTTGGTTTTGTTTTGTGGTGTTCGCCGTTGGCTTTGCGGTGTTGCGCAAATCGAGCGCCGC CCACGCGGGCGGCGCTCGATTGCCGCTCCAACACAAATGTATCGCCGGACACCTAAAAGCTCCCGCCGGCTAGACCATTCTTGCAAAACTTCAATCTTGA ATTTTTTTATTAAGTCAAGAACCACCCTGTTCAAATCCTTCCCGGCGTGCTACAAACTGGTTGAGCAATGATCTAGCTGCTTGATAACGAAGGGAAAAAT
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| DNA Sequence for Gene |
>D903_RS0124420
ATGACGAAGTCGGAGCTGATCGAACGTATTGTCACCCATCAAGGGCTGCTCTCGTCCAAGGACGTGGAGCTGGCCATCAAGACCATGCTTGAGCAGATGT CACAATGCCTTGCTACCGGCGATCGCATCGAGATCCGCGGTTTTGGCAGCTTCTCGCTGCACTATCGTGCCCCCCGCGTGGGCCGTAACCCGAAGACCGG TCAGTCGGTCAGCCTCGAAGGCAAGTTCGTGCCGCACTTCAAGCCCGGCAAAGAGTTGCGCGATCGGGTCAATGAAGACGAGCATGATGAGGTTCATACC TGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCCTCAAGGAGCAATCTGATGCGTAACCTCAAGCGCGCCCTGGCGGCGGTATTCGTGCTGCTGTTGGCGGCCGTGGTGCTGTTCTTCGTGCTGGAAAAC CAGCAAACCGTGTCGTTGGTCCTGTTCGGCTGGGCTGCTCCGGCAATGCCGGTTGCCGTGCTGGTGTTGGCCGCGTTGGTGATTGGCCTGGCAGTCGGGC CATTGTTGGGTGCCTACGGCGTGCAGCGCAGCAAGCGCAAGATCAGGGCGTCTGCCCGGCAGGCGGCACTGAGCGGTAACTAGGGAAATTTCCTACGCTC ACTTAGGAAAGCGTCACCTATGCATGCTCTGGTCGTCGTGGAGTAATAGCGCACTTCATTTTCGGCCCAGGTGAGTGTGCGCAGCATGGACTATCCCAGC CTTTCCCATCACGGTGGTGCCCGCAGCGTTACCGGGTCTTGTCACCAACTGCATCTCGCCCCATTCACCAGCCTGCTGGTCGACTGCGGCCTGGAGCAGG
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| Amino Acid Sequence |
>integration host factor subunit beta
MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRVGRNPKTGQSVSLEGKFVPHFKPGKELRDRVNEDEHDEVHT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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