Pseudomonas sp. LAIL14HWK12:I9, D903_RS0118340
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I9 D903DRAFT_scaffold00010.10_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGCACAACAGACACGCGTAGGCGTGTTGCAGGCCAGCGTCGATGTACGCCCGCAGCGCCATCCTGACCGGGTGCTGCACGTGCAGGCCGGGCAGCAAAC GCGCTTTGACCAGCAAGACTTCACCCTTGCCCATGCCCTGCCCGCCGACTCCACGGCCTGGCTACAGGGCATGCTGAGCGTGAACGACTGGCGCCTGGGC GACTTCATCGAAGAGCTGGGCCGCTATCGGCCGGGCGTGCTGCGCTGCGCCTCATCAATCCAGGCCATGAGCATTTCCGGCGCATTCCGTATCGACGATA CCGATATTGCGCTGGCCAACCTGCCGAAAACCCTGCCTGTAAAGGTGCGCTACCTCAGCCGCTACTGGGTGAATGTGGAACCCGCCTGAACGGCTGGTGA AAAAACTTTCGCTCAAATCTTGCTGATTTTGATTCTCGTCCGTCCCTGACACAAGCCGCGACGACAGCGACTTTCTGCCATAACTCGGAAGGATCACCCA
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| DNA Sequence for Gene |
>D903_RS0118340
ATGCCTCACCTGCACCCCACCCCTACCACGCTGAGCCAGGCCGTGCGCCTGGTGCTGTTCGGCATGTCCCTGGCCAGCGCGCCAGCCTTGCTGCTGATGC CTGCCCAAGCCATGGCCCAGAGCCAGACTGCCTACCACGTCGCGGCTGGCCCGCTGGGCAACGCCATCACCCAGTTTGGCGTGCAGGCGGGTGTGACCAT TTCGTTCGACACTGAGCAAACGCGCAACCTGAACAGCGCAGGCCTGGAAGGCAGCTACAGCATCGAGGAAGGGCTGGTGCGGCTGCTGAGCAACAGTGGC TTGCAGGCACAACGCCAGGGTAATGGCGGCTATGTGCTGGTGCCTTCAGACAACGGTTCGGCGATGGAACTGGGGCCACTGAACATCGATGCCAACCGGC TGGATGCGACCAGCGAAGGCACTCAGTCTTACACCGCCCGCGCCGTGACCATAGGCAAGGGTGTGCACACGCTGAAGGAAACCCCGCAGTCGGTCACCGT CATGACCCGCAAGATGCTCGACGACCAGAACCTCAACACCCTGGAACAGGTGCTGGACAAGACCCCGGGCATCACCGTGTACGACTCGCCCATGGGCGGC AAGTATTTCTACTCCCGCGGTTTCAACCTGGACGGCCAGTACCAGTACGACGGCGTGCCGCTGGATGTGGGTGGCAACTACGTGCAGGCCAACAGCTTTT CCAGCGACATGGCCTTCTATGACCGCGTCGAAATTCTCAAGGGTGCGGCTGGCATGATGAAGGGCTCCGGTTCCTCCGCCGGTGGCGTCAACTTCGTGCG TAAACGCGGCCAGGAAAAAGCCGCTACCACCGTCACCCTGTCTGCCGGTAGCTGGGACAACTACCGCGGCCAGGTCGATGTGGGCGGCCCGCTCAACGAA TCCGGCACGGTGCGTGGCCGGGCCGTGGCGGCGCTGCAGGACCGTCAGTACTTCTATGACATTGCCAAGCGCCAGGACCAGATTCTGTACGGCGCCATCG ACTGGGATGTCAGCCCCGACACTACGCTGGGCTTTGGCCTGGCCTATGAGGATGTCGATGCCACACCGTGCTATGCCGGTGTGCCACGCTACGCCGATGG CAGTGACCTGAAGCTGTCGCGTTCCACCTGCCTGGGGGTCAGCTGGAACGACCTGCAAAGCCAGCGCATTACCGGCTTTGCCGACCTCAAGCACCACTTC AACGATGACTGGACGCTGAACTTTGCCTCGATCTACACCCACAACAACCAGAACATCGAATACGCCTACTCCGAAGGCACGGTACCGGTCGGCGCCAGCA CCGGCAGCATGAGCGTGCGAGCCGGTCGTTTCGACTACGACCAGGACGACTATGGCTTCGATACCTATGTCGATGGCAAATTCGAGGCGTTCGGCCTGCA GCACGAGCTGATCATCGGCGCCAACGCCAGCCGGCAGAAAACCCATGACTACTTCGCGCTGATGCTGCTGGACGGCAAGCAGAACCCATTCGACCCGTCT GCACATTTCCCACACCCGTCCAAGTCCGATTACCTGGTCAACCCGACCCGCGGTGGCAGCGTGCCAACCGACTCCACCACCACGCAATACGGCACTTACG CCAACCTGCGCCTGAAGCTGGCAGAGCCGCTGACCCTGGTGCTGGGTGCACGGGTCAGCTGGTACCGCAACAAGAGCGACTCCTATACCCAGTACTATGA TTACTGGGTGAATAACCGCAGCGAAGAAAACGGCCAGGTCACGCCGTTCGCCGCCGTGCTGTACGACCTGAACAACCAGTGGACCGCCTACGCCAGCTAC GCCGACATCTTCCAGCCGCAAAGCGACAAAGTGGACGCCGAGCGGCAGTCACTCCAGCCCAAGACCGGTGCCAACTACGAGATTGGCATCAAGGGCGAGC TGCTTGAGGGTGCCCTGAATACTTCGTTCAACCTGTTCCGCACCGTCGAGAATCACCGCGCAGAAAGCGACTACATCGAGACCTGTCCGTCAGGCGACGG CTATTGCTACACCGACAGCGGCAAGGTGCGTGCGCAGGGCTTCGAAGCCGAGATCAGCGGCTCGCCCATCGAGCGCCTGCAACTGTTGGCAGGCTACACC TACACCCAGACCAAGTACCTGAAGACCATCGAGGACACCGACCCCACCGAGCTGACCTTCACCTCCAGCTTCATCCCGCGGCACATGCTCAAGGTGTGGG GTGACTACCAACTGGGCGGCGCCTTGGAGCGCTGGACCTTGGGTACCGGTTTCAACAGCCAGAGCGAGAACTTCCGTACCACCGGCAAGACCCGCGTCGA GCAGCCTGGCTACACCGTGTGGAACGGCCGCGTGCAGTACCGGCTTGACCAGAACTGGACCGTTGCCCTCAACGGCAACAACCTGTTCGACAAAAAGTAC TACGCCACTATCGGCGCGCCGGGCTGGGGCAACTTCTATGGCGAACCGCGTAACTTCATGGTGACGTTGCAAGGGGCGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATGCACCAGGGCCGCTTTGCGGCCCTTTTGATTTGCCAGGTCGCCTACAACAAGCCTCTCAGGTTCGCTCTCCCGCCGACTTTCCGTAGCGTGACGAAT GCCCCTTCGTGGAAGTGATAACCGGTGAAAACACCTACCGAAGTCAATACCACCGCATTTTCAGAAAACTCCTACGCGCGTATCGGAAGCGCAAAGCTCC AGCAAGAAGTGATTCCTCGCTAGGGTCCAGGTTCGGGTCGAATGCAGCGCGTTGCATGCATTTGCTGATCACTCCTGCTCACTGGAGCACATCCATGGAT TCATTGAACGAAGCCCTAGAATTGTGCCGGCGCATCACCACCGGCTACCGTCCCGCCCTGCGCAACAGCCCGGTCGCCGACTGCACCCGCCGCTTCGAGC TGCTGCCCCTGCGCTACGCCGCTGTCGGCGGCAACCCGGCACAACGCGCCCGCCTGCCCAAACTGCCGGGTTATCTCAGCCCGTTCCAGGACGTGGGCGA
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| Amino Acid Sequence |
>TonB-dependent receptor
MPHLHPTPTTLSQAVRLVLFGMSLASAPALLLMPAQAMAQSQTAYHVAAGPLGNAITQFGVQAGVTISFDTEQTRNLNSAGLEGSYSIEEGLVRLLSNSG LQAQRQGNGGYVLVPSDNGSAMELGPLNIDANRLDATSEGTQSYTARAVTIGKGVHTLKETPQSVTVMTRKMLDDQNLNTLEQVLDKTPGITVYDSPMGG KYFYSRGFNLDGQYQYDGVPLDVGGNYVQANSFSSDMAFYDRVEILKGAAGMMKGSGSSAGGVNFVRKRGQEKAATTVTLSAGSWDNYRGQVDVGGPLNE SGTVRGRAVAALQDRQYFYDIAKRQDQILYGAIDWDVSPDTTLGFGLAYEDVDATPCYAGVPRYADGSDLKLSRSTCLGVSWNDLQSQRITGFADLKHHF NDDWTLNFASIYTHNNQNIEYAYSEGTVPVGASTGSMSVRAGRFDYDQDDYGFDTYVDGKFEAFGLQHELIIGANASRQKTHDYFALMLLDGKQNPFDPS AHFPHPSKSDYLVNPTRGGSVPTDSTTTQYGTYANLRLKLAEPLTLVLGARVSWYRNKSDSYTQYYDYWVNNRSEENGQVTPFAAVLYDLNNQWTAYASY ADIFQPQSDKVDAERQSLQPKTGANYEIGIKGELLEGALNTSFNLFRTVENHRAESDYIETCPSGDGYCYTDSGKVRAQGFEAEISGSPIERLQLLAGYT YTQTKYLKTIEDTDPTELTFTSSFIPRHMLKVWGDYQLGGALERWTLGTGFNSQSENFRTTGKTRVEQPGYTVWNGRVQYRLDQNWTVALNGNNLFDKKY YATIGAPGWGNFYGEPRNFMVTLQGAF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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