Pseudomonas sp. LAIL14HWK12:I9, D903_RS0113420
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. LAIL14HWK12:I9 D903DRAFT_scaffold00005.5_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGGCCGAGCAGGTGATTGCCCTGATCAAGGCCGAGCAGGCCAAAGGCATCAACCTGTCGCGTATCTTCCTGGCCGGTTTCTCCCAGGGTGGCGCGGTGG TGCTGCACACTGCCTATATAAAGTGGCAAGAAGCACTGGGCGGGGTGATTGCCCTGTCCACCTATGCCCCCACCTTCAACGACCAGCACCAGTTGAGTGC GTGCCAGCAACGCACCCCGGCCCTGTGCCTGCACGGCGTGCACGACCCGGTGGTCATCCCGTCCATGGGCCGCACCGCCTTCGAGTTCCTGAACACCTGG GGTGTGGCCGCCCGCTGGCACGAGTACCCGATGGAGCACGAGGTGGTGGTCGAGGAGCTGAACGACATCCACGAATGGCTGGCCAAGCAACTGCAATAAG CCAGCACGGCTTGTAGTTGTAGGGCTATTCCACTACGCCGCGCCCGGTTCTTGCTTTACACTGCCCGGCGTACATTCCTTAACCAGTTGATGAGACGATC
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| DNA Sequence for Gene |
>D903_RS0113420
GTGCTCAAGGCACTCAAGAAAATATTCGGCAAGGGAGACGCCGCGCCACAGGCCGCCGCTCCTGCTGCCAGTGTGACGCCGCCTGCGCCCGCCCCTGCTG CAGAGGCCCGGCCCGCGCCCAAACCGGCCGCTCCACGCGCCAAATCCGCCCCTAAGGCCGAACAGCCCACCGCCGCTACGCCAGCCGCCGACACCCCGGC CAAGGAAAATCCGCGTCGTGAACGCAAGCCCAAGCCGCAGGCCAGCCTGTGGAAGCCGGAAGACTTCGTGGTCGAGCCGCAGGAAGGCAAAACCCGCTTC CACGACTTCAAGCTGTCCAACGAGCTGATGCACGCCATCCACGACCTGGGCTTCCCGTACTGCACGCCGATCCAGGCGCAGGTGCTGGGTTACACCCTGC GTGGCCAGGACGCCATTGGCCGGGCGCAGACCGGTACCGGCAAAACCGCTGCGTTCCTGATTTCGATCATTTCCCAGCTGCAGCAGACGCCGCCGCCCAA AGAGCGTTACATGGGTGAACCGCGCGCGCTGATCATCGCGCCCACCCGCGAGCTGGTGGTGCAAATCGCCAAGGACGCCATCGCCCTGACCAAGTACACC GGTCTGAACGTGATGAGCTTCGTCGGCGGTATGGACTTCGACAAGCAGCTCAAGGCCCTGGAAGCGCGCCACTGCGACATCCTGGTCGCCACCCCGGGTC GCCTGCTGGACTTCAACCAGCGCGGCGAAGTGCACCTGGACATGGTCGAGGTGATGGTGCTGGACGAAGCCGACCGCATGCTCGACATGGGCTTCATCCC GCAGGTACGCCAGATCATTCGCCAGACGCCGCCGAAAAGCGAGCGCCAGACGCTGCTGTTCTCGGCCACCTTCACCGACGACGTGATGAACCTGGCCAAG CAGTGGACCACCAACCCGGCCATCGTCGAGATCGAGCCGGAGAACGTGGCCAGCGAAACGGTCGAGCAGCACGTGTATGCCGTGGCCGGCAGCGACAAGT ACAAGCTGCTGTACAACCTGGTGACCCAGAACAAATGGGAACGGGTGATGGTGTTTGCCAACCGCAAGGACGAAGTGCGGCGCATCGAGGAAAAACTGGT ACGCGACGGCATCAATGCCGCCCAGCTGTCGGGCGACGTGCCGCAGCACAAGCGCATTCGTACACTGGAAAGCTTCCGCGAAGGGCGCATTACCGTGCTG GTGGCGACTGATGTGGCGGGGCGAGGTATTCACATCGATGGCATCAGCCACGTGATCAACTTCACCCTGCCGGAAGACCCGGATGACTACGTGCACCGCA TTGGCCGCACAGGCCGTGCGGGGACCAGTGGCGTGTCGATCAGCTTTGCCGGGGAGGATGACTCCTACCAGCTGCCGGCGATCGAAGAACTGCTGGGGCG CAAGATCAAGTGTGAGATGCCGCCGGATGAGCTGCTGAAGCCGGTGCCGCGCAAGCATCACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGGTGTTGGATTCTTCGCGCGCTTGCCCGCTCCCACCTCCACAGGTTTCGGAAGCTGTGGCGTACCTGTGGGAGCGGGCAAGCCCGCGAACCGGGGCAA AGCCCCGGCCATCAATATCCTGTCTACCAGCGCCCCGCCGCATCCTGGTCACTCTGCCTCCCTTCCACCCACCTTGGCCCTTCCTGGGTATTCTCCTTCT TCCAGAACGGCGCCCGGGTCTTCAAGTAGTCCATGATGAAGTTGCAGGCATCGAACGCCGCCTGCCGATGGGCACTGGCCACCCCCACGAACACAATCGG CTCGCCCGGTTCCAGCGCCCCTATGCGGTGCAGCACCTCTACCTTGAGCAACGGCCAGCGCTGCTCGGCCTCCACCACGATCTTGGCCAAGGCCTTTTCG GTCATCCCCGGATAGTGCTCCAGGAACATCCCTGCCACTTCGCGACCGTCGTTGAAATCCCGCACGTAGCCGACAAACCCGACCACCGCACCCACGCCGA
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| Amino Acid Sequence |
>ATP-dependent RNA helicase RhlB
MLKALKKIFGKGDAAPQAAAPAASVTPPAPAPAAEARPAPKPAAPRAKSAPKAEQPTAATPAADTPAKENPRRERKPKPQASLWKPEDFVVEPQEGKTRF HDFKLSNELMHAIHDLGFPYCTPIQAQVLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAIALTKYT GLNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMNLAK QWTTNPAIVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERVMVFANRKDEVRRIEEKLVRDGINAAQLSGDVPQHKRIRTLESFREGRITVL VATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGTSGVSISFAGEDDSYQLPAIEELLGRKIKCEMPPDELLKPVPRKHH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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